miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0005384
Located between position 13846971 and 13847161 on chromosome 4 strand +
mature miRNAs for MI0005384:
         ath-miR828 (MIMAT0004244): TCTTGCTTAAATGAGTATTCCA

References
[1]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"




>promoter (3kb upstream pre-miRNA, by PMRD):
ATTGAAATTGTTTATCTTCTACTTGTGGGTCACAAAAATCTCGCCGGCCCATTATATATATTATCCGGAGCTTCCAGGAG
TTGAGGTTGTGAAGCCATAGATATTGACGAAATACACTTTTTGTCTTTTTGTTGCTGTGCAACGTCATAGATCTAACTCC
GGAAGAAGAAGAAGATGAGTGACGAAACGACGTCATCTCCGTCCCCAGCTCCGGCGAAGAAGAAGCAGAATCTGGGATGG
ATGGAGTGGATGAGGGGATGGAGCAGTGTTTTCGGGGAGATTCTCTTCCAGAGGATCACAGCTTCTCATTTGGAGAATCC
TCTTCCTCTTCCTTCCGTCAACGACCTCACTTGCGTTGTCACTGGCTCCACCAGCGGCATTGGCCGTGAAACCGCGAGGT
TTGTTCTCTTCCCCGTTTCTTCCGATTTACAACCAAATTGAGTTTGATTTCGTCTAGATTGGGACTCGAATTACTGAAAA
CTTCCCTAAGCTTTTTAGCTCTTTTGCTTCTTCGGTCGCAGGCAGCTTGCAGAAGCTGGTGCTCATGTTGTGATGGCCGT
AAGGAACACAAAGGCGGCTCAGGAGCTGATACTGCAATGGCAGAACGAATGGTCTGGTAAAGGTCTCCCACTCAATATTG
AGGTAACCTTATAATGGTGATGTACTTATTACAATTCAGTAATGTGTATTACTGGGACTGAAATTAGCCAAGAATGAGAT
AAAGCGTTTTGTACAATAGAAATTTCAAATAATATGTGAACTATCTAGACTGTGGCTAAGCCAATTTCTTGTATATTAGT
TAGAGAGTTAGACTATTGGCTTGTAACGTCTAGATAGTTGATAATAATACTCTGTTTTATTTTGTAAAGGCAATGGAGAT
TGATCTACTCTCACTGGATTCTGTCGCGAGATTTGCTGAGGCTTTCAACGCTCGGTTAGGACCTTTGCATGTTCTGATTA
ACAATGCTGGGATGTTTGCTATGGGAGGTTGGTTTTATTGCCGTTTTAGCTATAAGCATTGAGTTTCCCCTTCTGTTGTT
TCCTGTATCTATTTTCATCATCTCTTTGTTATGATCTCAAAGTCATACTTGTGAACCAATCATCATCATCATCAACATTC
CAACTTGATGGACCCAATTGGTGAGAACTGGCATGTTCTTTCATAGCAACTCTGTCCAATGGGTCTCCTTTTTAAATGAT
TGGTTGTCAGATGCTACATTTTCTGCAGTATGTGTTGAGGAAAAGTAACCTTAAAATGCTCTGTTCTCTGATTTGTGCAG
AGGCGCAAAAATTCTCAGAGGAAGGATATGAGCAGCACATGCAAGTGAATCATTTAGCTCCAGCGCTGCTTTCAGTACTT
CTTTTGCCGTCTCTGATCCGAGGCTCTCCTAGCCGAATCATTAATGTGAATTCCGTTGTAAGTTCTCTATGATCACTGAT
ACTGCAGGCTCCAAGTCTGTATTCTCTAGTTTATATTCTCTTTGGTATGAGTAATCATGTTGACAGGTTGATTTGTTTGT
GTATTCTGTAACTTGAAAACCTCTGGTCTTGTCAATTGGTTGCAGAATATGTAGATAACTGATATAGATCTCTCTAAATC
ACTGAACTACATATGCATATTGTATTAACACAGTCTTGGTATAGAGAAACGATACAACCATAGCTTGTTGAAAGTTTCAA
CCCCAAATACGCTTCCATGACTGCACTATGTCATTACTCATTTCAGAAGAATTCTGTGCCTGGCTGTTTATGAAAACTGA
AACAGTTTATATTTATTGTCTTTGATTATTACTTTTTCATGCAAGATAATGGGTTGTGGGATTCACTTTTGTAGATGCAT
AGTGTCGGTTTTGTTGACCCGGATGACATGAATGTTGTTTCTGGTAGACGTAAGTACTCAAGCCTTATAGGATACTCAAG
CAGCAAGCTTGCCCAGGTGAGCTTACAGTAATGACATCTGCCGTAGTTTTCATCTGCCGTAGTTTCCATTTTCTGAAAGA
GGCTTATTTTCAGAAACTGGTGAGTTAAGTCTCGCTCTCTGATCTTCCATCTTCCAGATTATGTTTAGTAGCATTCTTTT
CAAAAAGCTTCCTCTGGAAACAGGAGTCAGCGTCGTATGTCTATCCCCTGGTGTTGTCCTAACAAATGTTGTGAGTATTA
GCTTCACTTCATTTCGTTACAAGTGCAGGATTCCTCTGTTTTCTCAGAAATTCATTGCGTTGAACTGCCTATTTCTTTCC
GAAATTTACAGGCCAGGGATCTATCCAGGATTCTTCAAGCTCTTTACGCAGTGATACCTTATTTCATATTTTCACCCCAA
GAAGGTTGTAGAAGTTCTCTATTCTCGGCCACAGATCCTCAGATTCCAGAGTACTGGGAAACACTAAAAAACGATGATTG
GCCTGTTTGCCCATTCATCTCTCAAGATTGCCGCCCTGCAAATCCTTCCGAAGAAGCACACAACACAGAAACTGCACAGA
GAGTGTGGAAAAAGACGTTAGAGCTGGTGGGTCTTCCTCTCGATGCAGTTGAGAAGCTCATAGAAGGGGAAAATATCCAA
TGCCGGTATGGAGCACAACACGAATAGTCTTTCAAAATTACCACAGGTTAAGTGACCCATTACAGATCAAAGGGTAGGTA
ATTGAGAAAATATCTTTTTTTTTTGTTTCCTTGTATTAATCTACACGATACAGTGGGGAATGAATCCCCCAGGCATGTAG
TTTGCTTGAGAATGTTTGATTGTTGGATAAAAGTCAAGCTTTAGCTACCATTCCATTGCTTTTACTTACAAGTCTTGTTC
AAGTATTTGGTTAGTGTGTCTTGGAGTTATTAAGATGTTCAGTAGTAGAGTATGGTAGCCTGGGTTGGTGGGTAGTTTCT
TGTTTGAGTTTAGGGTATTTTCGTAATTTTCTTTATTGTTTGTGGAGTCACGTTGCTCATATATAGTTATAGGGATATAT
ATCAATTAGAGTCATCATCTCTCTTACTCTCATGGTGACA