| Basic information from miRBase |
| hairpin accession number: MI0005386 |
| Located between position 4820355 and 4820549 on chromosome 1 strand - |
| mature miRNAs for MI0005386: |
| ath-miR830* (MIMAT0004247): TCTTCTCCAAATAGTTTAGGTT |
| ath-miR830 (MIMAT0004248): TAACTATTTTGAGAAGAAGTG |
| References |
| [1]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [2]Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes" |
| [3]Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" |
>promoter (3kb upstream pre-miRNA, by PMRD):
ATTCGTCGGGTGAAAAAGATACCGAGCGAGATGGTGAAAGACGGCTTCTTTCTGCGGGAACAGCTTCATTAGTTCGGTTT
GGAAAGTTGGATTCAACCATAAAGATGGGACAAAGTAGACATTGGCTTTGACAATCAACCAAGGGACTTTGTCCACTAAA
GATTGATCCTTTTGACAGAAGAACATCTTATCATTATCCCTTGAATCATGAAGAATATGAAGATACAGATGCGGCGGGAT
CAAAGTGGAGTTGATGGCTTGATTGTTCAACATTGTTCCGTAACAACGAGAGTATCCCTTGTTGTAGCCATCAATCTGCT
TCATCAATGGGAATTCAAGAGGAAGTAACCATGAAGTACCTGGAAACGGCTCGCAGAAGAGATCACTTATATCTTTGCTT
TGATCAACAAGAACAACTCTCTCTGTCAAGAGAGCGTAGAGGAAGACAGAGGCAAGAGTAAGTATTCTGTTTCCAAGCCC
GTAAACCGCAACCCACACAATGTATCTGCATTCACCAACAGATTTGCTTGCATAATTCTCATCATCATGACCAAGAATCT
CTGTTGCTTTCTTGTAAGCATCCGTGCCTGGACCGCAACGCTTGTGAAGCTTCTCGTAACTTCTAAGCTTAGAGACAAGA
TATTCCGAAGGCTTGTACGGTGAAGCCTTCCGGTACAACAAAGATTGCTGATACCTACTCAAGCAAGAACCTTCATCGAA
ATCCGCGGTTAAAAGCCCTCCGATCAGTCTATCTCTCGGTGTTTCGGATTCCCTTGAAACTGTTACAAGAAATAGAAAGT
CATAAGCAGCAATTCTGACAATTCTTGAGTTAAACAAAAGATAGATGATTTTATTTACCGTTGGAAGTAGCAACAAGAAG
TTGGTTGTTGAAGTCGTTTGAGAATGAAACTAACACTACAGACCAAATTAGTAAGCCACTAAAGACTAGTGTTAGCAGAA
TCTTCATCTTCAAACCAAAAGCTCTGAAAACTTCGCTGGAGATCTGAAAGATGTGATACATGTTGACTTTAGTATGATCA
GCTATAACTAGGAGATTGATTCAAAAGAGTTATATATCTAGCGTGATTACAACTCTTTATTCTTAATTAAAGGTGACGAA
ACATGCATTTGTATATAATACTAAGTCTTTTGAATATTCTAATGGGTCATTGTTAAGTTGTGACAATCAACGAACTACGT
AACGTGACTCCACTTTTTTTTAAACTAGAAAAGTCTTGATCTTCGATTTATGTGAATCATCAAGTTGAGTTATATATAAT
TTTAAACTAACGAAGAAATGACCAATGTGACTAGGGACTTGTTTTGTAGTAAAGCAATAATCCTCAAAATGGTGAGAACT
TGGAATCCAAACAATACATCACATGTCATGTATTATTTTCAAATTGACAAATCATACATTCATTTATTTTATGGAAATAA
TACTAATCAGATCCGGAAATTCGCGTTGTTGACTAAGAATAAAGAGAGTAAACAAAATTGATTTATGAGTGATGAGCCTA
TCCAAAACTTACCATTTTGACAACTTATTGATAGGCCAATTCAACTTTTATGTTTTGGTTTTAAAATGGGTTATGTTTCA
AATCCTTTTTTCTTTTTTTAGGCAGCTTCTCGAAATCATTTTTAAAGATGTTGCATGTAATTTGGCTAATCTAGTCGGGT
TTCTTATAGAAAACTTTTTGCATCTACCATCCAATAAAAAAATGCTACTAGACCACTAATTGCTTTATTAGTATTATGAA
AACGTATTGCAATGACCAATAAAAATAGCTTTCGTTGCTAGCAAAACAAGCTACCTTCACTAGAGTCGTTCGTTACTCTG
TTTAGGTCTACTCTGTTTCGAACGGTTTGAAATAGAAAATCTGAACTCATGGGCCTTTAACAACTAAGCCCAAAATCAAG
AGATAAAAGCCTATGCTGAACTTTTCACTAAACCAACCGAAATCAACGATTAAAACAGATTAAACCAATCCACAGGGATT
TTTAGAGGTATGAATGAATGTTCTATGAAAACTATGTTAAGAATTCTAATGGAATTATCAATATAGACCTTTGAACTAAG
ATTATAATTTTTATCAAATGAAGTTTTATTCATCTTTTGAATATGTATATATTGAATGTGTACTTAAATATGAACAGAAA
ACAAATTATAAAGTTTCATATATAAATTCATAACGTACCTTGCCTTGATTTGTTGGTGGTTGAATTGATCTTTGAGAACA
TGTTTGTTCTCGAACATATGGATCGGATGGTTTTTTGGTGTCCATATTGTCAATCAATCTATAAACAAATTTTTTTATAA
TTGAAAACGCAACTTAAAAAATAGTCATGAAAAAATGATTCAGATTGAACGAAGACGAAAAAAGCCAATAAAAAATAGAA
ACAAAGAAGAACAAGAAGGTGATAAAAAGAAAATTACAAAAGAAGAACAGAGAATTTTTTTTTTTTTTTTTTTTCAACAA
AGAGAGCTTAATGCTAATTGCTAAACGTTCATAGTAAGAAGTTATTATGCCCGTATTTAATAATATTGACTGTTTTCTAG
AAGAAGAAAAAAAAGGTGAAAAGATTTATGCCTTTATGATTATTTCCATATCTGTTTAATGTATATAGTTTAGGTCAATT
GTCATAAGTAAATATTATTTGGTTTTCCAAAGACAGCTTAATGGTTCAAATTTAACTTGGAAAACAATCTTTAGCATTTA
ATTTTGTGATATGTATTAACATTTTAATAGGTAAGGTAACATTGACTATTTTATACGGAAAATAATAATATGATTATTTC
CAGAATTTTATTATATGCAATATTGAAAATCTAAAACTTAAAATTCAAATTTCATTTTTTTGACACTTGTTAAAAACTCA
GCTTTATAACTCTTTTTTTTACTTTTAAACATTTTAAAAATAATAATAAATTACACATGATATTAACCAAAAACCTATAA
AATTAGGATTATTTTTGTTTTGTTTTGTCTATTTCACCAG