miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0005389
Located between position 29525151 and 29525337 on chromosome 1 strand +
mature miRNAs for MI0005389:
         ath-miR833-5p (MIMAT0004252): TGTTTGTTGTACTCGGTCTAGT
         ath-miR833-3p (MIMAT0004253): TAGACCGATGTCAACAAACAAG

References
[1]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2]Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"




>promoter (3kb upstream pre-miRNA, by PMRD):
CATAATTACGCAATACGTCAACAGTTTAGGTAGGTTTTTTGAAAATTTTACATGTTTAGGTATAAATCAACATTTCTCGT
TTATACCGATTGAAAAACACATTCTCTAAATAGTCGAGATTGAAAAAAATATTTTCCCCCATTTTCTATAATGCTATAAT
TTATTCTAAACAGTAGACAAACTCGTCTTTGATGCATACCAATAATATAAAATATCGAGGAGACACATTAGTGGATCCTT
CAAGGACGAGTTGGTCGATTTGAGATAAGGAAGACAATATTTATTGACCCTCTTTGGCTTTCAATTTTGTTTGCTAATGG
TTAGGGTTTATTATTATTTTTGGTTTAATATGATGCAAGTTTAAATAGGTAACTCGGTTTGGTTTATTTTATTTCGTTGG
TTTCGACTATCACATCGATCTATAATGTCAAATTTACAATCAAATTCTTTTAAAACTTTTTTTTTTTTATAACTTATTTT
AGTTTTATAAGGAATATACGGATTTCTCAAACAAACAAGAAAAGGTGTTATTTGAACACTTGGAAAGAATTCAAATTTTT
TTTATAGTAGTTTTCCCGTTAAAAGTTCACATAAAAATATATCATCAATGTAAGACGATATTCAGGGAAATTGAAGATAT
TGGGTGCCTGACATGTGACAATATATGACAGCTTCTGTCGGTCCTGTTTCTTGTTTGTCACATGCGATTGCTTGGGGATT
GTGATTTATAACCACACAACTTATGGTACTTTGATATATGTAAATGGCGACGATGATTTTTTTTCTGTTGATGATTGACG
TATTATTGTGAATCTTGTTTTCTTTTATATGTTTCGTCTATCTCTTACAAAATTTGTTGATTTCCAACTTTTCATCATTT
TAGTTTTTGACAATTATATATGTGTAAGAGGATTGGTGAATCATCAGTGATTTTCTTACTTTTCATATGCTTTCCAACTC
TTCATCATCATAAATTTTTAATATTCACACTCCCTAGACTGGTCACAGCCAAAAGATCTCAAAAATCTGACCCGGACAAG
TATACTAATAAAAGGAAAAAATATTGGGAGATATAGTGTCATGCATGGTGTGCAAGAGAAAAAACTATTAATTAATGTAG
CTTATTAATCTAGAACTTGCTATATACTAGAACAATTAAAACGTGACTGAAAATTTAGTACTTAATCTCTACAACACTAT
AACATCCACATATATTAATTTCTTCAATTAACCTTGATAAGAGTTAAAAAAGTAAAAAACATCGAGAAGAGTTGTAGCTG
TGGTCAACACTTGAGAGGCAGCACGATGAGCTCCATATGGAACGTTGCAATGTTGATGGTAGCTTTGGTGGTTGTGAGGA
TCAGCCACTGGCTTTACCGATGGTCAAACCCTAAGTGCCCTGGCAAGTTACCACCTGGATCGATGGGTTTTCCAATCATT
GGAGAGACTCTCGATTTCTTTAAGCCTTGTGGAGTCGAAGGTATCCCAACCTTTGTTAAGAAGAGGATGATAAGGTTAGA
TTTCAATAATATGTAACGTACGGGAAGAGATTTTGTATATATATGGTAAGTTTTGTGTTTGTATGAATCTTTCTAGGTAT
GGGCCGTTGTTTCGAACAAACATTTTTGGTTCCAAAACCGTGGTTTCGACAGATCCGGATGTGATCCACCAGATTTTCCG
GCAAGAGAACACGTCTTTTGAGCTAGGCTATCCAGACATATTTGTGAAAGTATTTGGAAAAGATAATTTGTTCTTGAAGG
AAGTGTTCATCCACAAGTACCTCCAAAAAATCACTATGCAAATTCTTGGCTCCGAGGGTTTGAAGCAAACAATGTTAGGA
AACATGGACAAAGCAACCCGCGACCATATTAGGTCCATTGCTAGCCAGGGGAGCTTCAATGTTCGTAAAGAAGTTGAAAA
CGTAAGTTTACACATCTTCATTTTTGTCTTTACCAATTTCAGCTCGTACCAAGAAAATCTTCCTTAATATTGCAGTTGGT
AGTAGCGTACATGACACCAAAGCTGATAAGTAACCTTAAACCAGAGACGCAATCAAAGCTTATAGATAATCTCAACGCCT
TCAATCTTGATTGGTTTAAGTCCTTCTTAAGACTCTCTACTTGGAAAGCTGTCACCAAAGCCCTCAAGGTGACTTAAAAC
ATTTCCTTTTTAGTTTTTTGGAACTTTTTATATTTAGTAATAATAAGTAGCACATGTTTTCTCAACTAATTGCTTGTTGT
ATTCAGTCACGCGAAGAAGCTATCCAGGTGATGAAAGACGTTCTCATGATGAGAAAAGAGACGCGAGAGAAGCAAGAAGA
CTTCCTTAACACGCTTCTAGAAGAACTGGAGAAAGACGGTAGCTTTTTCGACCAAGGATCGGCTATAAATCTCATCTTCC
TTCTGGCGTTTGCCTTGAGAGAAGGTACCTCTAGTTGTACTGCTTTGGCCGTGAAGTTCATATCCAAAGACCCGAAAGTG
CTTGCAGAGCTCAAGGTAATATATAAAGAAACATGTATATATGGCTATCGTCTTTAAGAACAAGTGTGGATGGATTTGAT
AGAGTCATATATATTGTGGCACAGCGTGAGCATAAGGCAATTGTAGACAACAGAAAAGATAAGGAAGCTGGAGTTAGCTG
GGAAGAATATAGACACAACATGACTTTCACCAACATGGTAGATTAAATACCCCCATCTATATATATACATATTTGTATGA
GATATTTACAAGTGGAAGATATGACATTAATCTATAGGTTAGCAATGAGGTGCTTCGCCTAGCAAACACGACCCCTTTGT
TGTTTCGAAAGGCGGTGCAAGATGTTGAGATCAAAGGCAAGTACTACTTGGAAGTTATACATGTATGTATAAAAATATTC
TCTGAATCACTAGAAGAAACTTTAATCCTGGGCAGGATATACAATTCCGGCTGGTTGGATTGTGGCGGTTGCACCTTCAG
CGGTTCATTTTGATCCTGCAATCTATGAGAACCCATTTGA