miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0001776
Located between position 282392 and 282558 on chromosome Gm08 strand -
mature miRNAs for MI0001776:
         gma-miR166b (MIMAT0001678): TCGGACCAGGCTTCATTCCCC

References
[1]Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2]Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"




>promoter (3kb upstream pre-miRNA, by PMRD):
TTTACTTTGATGACTGGGCCTCTTTGAATAGAAAGTAGGGGCTTCTTTTTACATACCCCTTTTTTCTCTTTGTCTTCACA
TTGCTCGTCCTTGTTTGACAAAAATATTCTAGTCTATGTAAGACCCAATACTGCAGCGATATTACGAAAATTAGTCTATG
TAATTTATGTAATGCATGAAAAAATTACATTTCAAAAACAAGATTTTGTAATGTACTCATATAGCTAGTTAAGTGGAGTT
AGGGAGGACTTCAGATGTGTCTATATGTATGAGAATCATAACATTACGCATACATTGCTTGATCTCAGAATCTTTTAAAA
GTCATGTTTGGTCCTTGGGTCAGGTGGGCTACACACAAATCGCTTGGATCAGTTACTAAGAAACTTTGCACATGTGTTAA
GCTTAAGTCACCGTATTGGATTAAGACACGTGCAATGGGTTCAAAACAAAACGAATGAAGACATATATGGCCACTATCTA
GTACTATGTTTCCTTTTCCAATCCTCACTAAGAAGGAGGGATGAAACACGATGGCACCCACAAAAATTGCATATTTTCAA
TTCCCTTCCTTTCATTGTTTTATTATACCAAACAAATGATGGCCCAAATCATTGTCTCTTCTTTTTCTCTTTCCCTTCTA
TGTGTGCATACCAAATTAATGGAAGAAGAAAAAGGGAGAAAAAGGATCAATATGCAAAACCCCTTTGATCATCACCCATG
AAAAGCACTGTATTTTTCATTATTTTAACCTTTTTTATGCTGTGGCATTTAATTATAAAAAAAAGTGGCCGAATAATAGT
GAGAGGAGATATAAATTGGATGCTTCATCTATGTACACATGAAAACAAAAGCTCTGAGCTAGTGACAGGAGCTTAAATCA
TTATACAGTAACAATTATAAAATCAAATTTTGGTATTTTGAAAAAAAAAATAATGGTAAGCGAAATACGCATGTTGTTCA
CTATATTCTTAAGTAAATTAACATCACAATACTATTTTGAATTTGTTTATTACTGGTATTATTATGAAATTTTAAATTTT
GTTTAAAAGATTTTGTTGGTGGCTATCTGACAGTGTAGAAAAGTTAGCAGCTAGCTCAAAAGATAATAAATTCATGATGA
AGCTGTCAACAATAAAGGAGTGCAATTGTTTCACTTCTTTAAAGAGACCAAGTTTGTCATGAAACGATGTCCGAGTAGCC
GTGTCTTTCTCTCAGTTTCATTTCCCAAGAAAAACCAGATACTCTACATTTATTTACTCTCTCTCTCTCCCCCCATAATG
CAATTTGAAATGCTAAAAGATCTCATCTCACTATTACTACATACTATGACTCCACGAAAAGGTAGCATATGAAGCTGATA
TTGCTGATCCAAGCTTTTCCTGAGTTGGTTTCTGCATTTTCAACAACTTTAGAAGCTCCATAAATACATTACACTAAAAC
ACACACATCAGACACAAAATAATAATAGAAGAGAAGAGAAGAGAAGCTCTATTTCCTCTTTCTCCTTTTTCCAGGTGTAG
TTTGCATCAGCTTAGTTATGCATGCAGCTAGATACACACATCTGAGTTCGTCATGATAATGGAAGCTGGCAATGACATGG
TGTGGTCATAGATCATAATCATGTTATAGTATCCGTTTCTCTAGCTAGTGACAGACACAGACACATAGAATCCCTAGCTG
TAGCTTCTCCTGATTCTCACTACTCGTTAACTGTTCTTGCACATCTCTTCTCTTCTCTTCTTTCATTCATTAGTCTTTCA
CATGTATATGCATCAGCAACTTCAGCAGCTAGTGAGTGCATGCCTTCAACACTCATCACTGTCATTTCACTACACAACAA
AACCAAAATAAATTCAACAGCGCATCATGTTTCAAAACCTCACATCATACACATAAATATTTTTAGACTTATGTATGAAG
GTGTATGTATATATGAGTGATAATTAATTCAATAACTCATTAAATATATATTTATTACTTGCTTTACTGGGTAACTGTTA
ATTTACCTGAAGTACATTCATTCAGATGTTGACGAAAATGATGGCAAGCCTTTTCCCCAAGTAAAATTATGAAGTTGGCT
TCCCTAAAATTTTCACCGGCCAGAAAACAGGTTTATTGACAGAAAGCTGAAGCAATAATATTCAAAGCTGAAAGGACTTT
AGAAGAGGAAAGTTATGCTAGAAAGACCTAAGAGGCATAGCAGCTAGTTGCAGATAAAGAAAAGAATTTCACATATGATA
TAATAGGTTTTCACTGTTGATGCTTTCATTCACTTCAGCTTTCTTGTCCACGTGAAATAAACATTCCCGCAGGTCTGAGG
GCCTGTGATTAGCCAACTTATTTGTTAATAATATTTTCATAGGTAGTATCTTATCTCTCTGAAATGTTAATCTTAAATTA
ATACTATACCAGAAAACTAGACAGATTTGCTGTGGTAAAAATGCTTCTCTCTCTCTCTTGAGTGGGTGTATGAGAGAGAA
AAATAGGGAAACACAAACAAGAAGTCATTTTGAAAAGATAACCATTTGTTTAAAAATATATGATTGTTTTCTAAAATTAA
CATATTTTCAAGCATGGACTAATTCTTCATACAAATGCCTTCAAATTAATGATGAAAACTAAATCTATACATGGGAGACT
TGAGCATATATAGTTACATAATCTGAGCAGATGCAAACAGCTCAAACTTTTTTTTTCTCTATTTTAGCCACACATATATG
TAAAGAAATTGGTTCATCCATCACTAAAGTAAGTTGTAGCTTGGGATTTGGGAGAAGGTAGCATATTCACTCGTAATAAA
AAAGAAGGTAACGAAAATACAACCTTTACAAAACAAGATTGCCACCACTGAGTTGAAAATTCTGAGCCTGCAAAAACAAA
CTGTGAAAGAGCATTTTTTTTTTTTTTGTGCAGATTGAGAGAAAGATGAAAGGAAGAGAAAGCCTTACCATAAGGGCATG
CGAGATATGAAAATGGAGAGAAAGAAATTTAAATTAAGGA