miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0001786
Located between position 26329931 and 26330056 on chromosome Gm13 strand +
mature miRNAs for MI0001786:
         gma-miR396b (MIMAT0001688): TTCCACAGCTTTCTTGAACTT

References
[1]Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2]Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"




>promoter (3kb upstream pre-miRNA, by PMRD):
TAAGAAGAATAGAAATGAATACATTTCTCTTTACCTATTTTGATAAAGTAGAAGACAGAATATAAATGAATAAACTAATT
GTGTGAAAAATATTATGAAGGTAATTAAAAATAAATAAATTCAATCCAAAAATTAAACTTTCTACTCTATTATTTTTTAA
CAAAATTATTTATTATCTTTTTAAATATTTGGTTATAAAAATATTTAATTTTTAAGAAACTAAAAATAAAAAATAAATAG
GAGATATCTTCTCTCCTGCCCCCATTTCTTGCCAATTTGAGGGGACGGGGCAGCTTTTTTTTTTTTTTTTTCTCGTGAGT
TCCATTGAAAATAAATTTCTCTAAAAATTTAGTATTTCTATCTTATCTTTCTGTTTTCTCCTTTTTTTTTTCAATTCCTA
TTTTTCCTAAAACAAATAATGGGCTAGTACTAAGCAAATAGCTTTTAGATAGTAGGTAGGTTGGACTTTTAAATATACGA
AAAATAATAAGAATATTTTTTAAAAAAATATTTTTCCAAAGTTTGAGTCATCTCATATTTTTACAATATAAAAGAGGTTG
GAACCTAATTGTCTTTGTTAAATTATATAGAAGGTTCTGGCTCAAACAATTAATTAAGATATATACAAATAATTTGCTTC
TATCTTTTTCCCAGCATATTTGGTCATGTGACAAGAGAGGACTCAAATCCTAAATCTTACATTGTGATTGTTCTTTCTGT
GTGTGAGTGGAATAAGATAACATATATATGCAAGCTTTTAGTGACTCAAGACCATGAATACGCATGTATACTGCTTTATT
GTTGAAAAAATAAAAGGAATCTGTGCTCTTTTTAAATTGTTTCGTGCCTTGCAGAATGTCTTTCTAATTTCTCATAAACG
ACAAATCATTGGGCAAACATTTTTTTTATATAAAAAAAAAGGCAAAACCAATTTTTTGGGCTTTTAATTACAATGAATTT
TTTGTTAGGTGCATGAATCCGAACATTCCCATATATACACCTTTGTTGAGGTGGAAGGTGGTGGGGAAGCCTTGCCATCA
AAGCTAGAGTCCCGTTGGCAATAATTATATATAATTTTCTTAAGTGGAATTTAGGTTAACATATTAAGAGCGGGACACAA
AAACAACGAGTAGCAAGTTAAACTGCATGGCAACTGACACGTTCCTGTTTAGCCTCAGACATAAGAAAAATATATACTAC
CACATTTATTTTTCTTCCTTCTAAAAAAAAATATAAAATTAATAAACAAAAGGCCATGTATATTAAGCAGTGGTGTCAAA
AGCACGAATAATTCCGTACTAGGAAATTTAACTGAGGATTCAGTTTTTGTCATTGAAGGCTTCACTGTGTATCCATGATC
AGTTATAGCTCTGTCTCTCTGGTAACTCACACGATGTCGTGTCACAATTCACAAATCTGTTTCATGGTATACTCAATGGG
GTTTCGTGTGCCCGTGTTCAAAATTTTCACTATTTCCCTGAACGCTGTAAAATAAATAAAATAAAATTGGACAAATATAT
ATTTATATATTGGTGCATTGTTACCGAATTATGTTTAGTACCATCACACTAGCTCTTCATCATGAATATACTAATCATAT
CCATTTTATACGAAGATGCACAGAAATGCCATGCTTCCGTGTCTCCCTGATCAATCTGATTTTTTGGGGTCCTACTTCTC
TGCACAACTTGTGGGCATTCTCTTAAGCTAAAACGTTCCAAGTGTATGAAAACATTTGCTTTATATTTGGTAAAGGTTCT
CCGTTTTATCTTATACAATAGAAATACTATAATTAATTATCCCCATTAAGGTTCTGCCATACCCCAGATGCTTATTCGGG
TGAAAATTCAATTGATTTTCATATTGGTATGCTAAATTGGGTCTATTTAGCTCTTCGCAACAATGCAGTCTGCAACCTAG
ACAGTGATCTAGACGAAGTTCGTGACCATGTGAGCGTGTAAAACTGTAAGTGTGATAAATTAAATTACCAAAGATTTCAG
CACAACTTGGGTTTCTAGAGAGAAAGAGACAGGCAACCAGAGGAGAGGGTGAAAGAGAGAGAAGAGGGGATTGAAAATCA
ATACGCCAAATGATGTCAGGAGAGAGGAGTGGTTAAAAAAATGATGTCACGTAGTGACAAAGGTAAACCTTTTTCACAGA
AATGTAGGAGAAGATGTGGATTCACTAAACTAAAAGGGCAACAGGAAGAACTATATATCATCATTAATGATAAAAAGGAA
AGGCGGGGGAATCTTCTCTGCAAGCACTGCCTTTTTTTTTCACCATTTGATTGAATGAATCAGATTTAGTTAATGGGAAA
GTTCACCTAATTCTACAGACAACTAGGAAACATTAAATTTTTTCTTCGTTAATTTATCTCAAAAATAAAAATTCAATTTT
CTACTGCCGCTCACCTTGCATGGCTCAAACGTGTAGCATCAGATTCAATATATTTTTCTTTTGTGTGTGTGTTTTTTCTT
TTCAACCCTATCACCGGAGGGTAATTAAAAAACCCGCATTGTCATTGTGCCTCCAAGACTCAAGAGAAAAGAACCTACCC
ATTTTCTCACAGAAAACAGAACTGGTAAATTCGGATAATAATTAATTAAAGTGGGTATTTTCCAATTCTTCCCTTAAATG
AAATTAAACAGAAAGAAAACAATTTGACCGGATCAAATTAAAGAATTATGCATCAACAAGGCTATAAATTCATCAGGTAA
AGTGAATCTTATATATAACAAAGCCATAAAATCTCTAGATTAAGAGATTATTATGTATATCACACTGAAAATTTTTCCAG
AGAAAGAGATCACATATATTTAATTTACACTCATCAACATCACACCCCCGGTATAACTTATAAGATGAAAGAGGGTAGTG
AGAGTTACCGTGAATGAAAAGATAAGGATGAAACTAGAGAATTGATGAAGAGGAAGATGTGTGTGTTCACCTTGTACTCT
GAAATCTTGCAAGTGATGGTACCAAATGAAAGCAATTAAA