miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Basic information from miRBase

hairpin accession number: MI0003673

Located between position 54466474 and 54466570 on chromosome 5 strand -

Overlapping with sense strand of CDC20B-005 (intron 1).

(Ensemble: OTTHUMT00000369716)

mature miRNAs for MI0003673:

hsa-miR-449b (MIMAT0003327): AGGCAGTGTATTGTTAGCTGGC

hsa-miR-449b* (MIMAT0009203): CAGCCACAACTACCCTGCCACT

You can find this miRNA in HGNC: MIR449B (accession: 32794)

References

[1]Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE, Proc Natl Acad Sci U S A. 103:3687-3692(2006)., "The colorectal microRNAome"

[2]Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M, Cell. 129:1401-1414(2007)., "A mammalian microRNA expression atlas based on small RNA library sequencing"

[3]Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G, J Virol. 83:3333-3341(2009)., "Identification of novel Epstein-Barr virus microRNA genes from nasopharyngeal carcinomas"

PROMOTER INFORMATION

PROMOTER ID

LOCALIZATION

SEQUENCE

REFERENCE

SNP

TFBS

358

chr5, 54504660-54504860, -

promoter sequence

Marson et al.