miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0005561
Located between position 30552109 and 30552194 on chromosome 6 strand +
Overlapping with sense strand of ABCF1-005 (intron 5).
(Ensemble: OTTHUMT00000256168)
mature miRNAs for MI0005561:
         hsa-miR-877 (MIMAT0004949): GTAGAGGAGATGGCGCAGGG
         hsa-miR-877* (MIMAT0004950): TCCTCTTCTCCCTCCTCCCAG
You can find this miRNA in HGNC: MIR877 (accession: 33660)

References
[1]Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E, Genome Res. 16:1289-1298(2006)., "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis"
[2]Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M, Cell. 129:1401-1414(2007)., "A mammalian microRNA expression atlas based on small RNA library sequencing"
[3]Berezikov E, Chung WJ, Willis J, Cuppen E, Lai EC, Mol Cell. 28:328-336(2007)., "Mammalian mirtron genes"


PROMOTER INFORMATION
PROMOTER ID
LOCALIZATION
SEQUENCE
REFERENCE
SNP
TFBS
370 chr6, 30631312-30631512, + promoter sequence Marson et al.
371 chr6, 30646454-30647922, + promoter sequence Marson et al.
685 chr6, 30655088-30660173, + promoter sequence UCSC


more data
Expression data from dbDEMC