miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0008295
Located between position 21478066 and 21478258 on chromosome 12 strand +
mature miRNAs for MI0008295:
         osa-miR1882h (MIMAT0007846): AGATTGCTTTCAAGGTCATTTCTT

References
[1]Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"




>promoter (3kb upstream pre-miRNA, by PMRD):
TGCATGGATTCATCTCCTTGCAATACAGCTTGAGCCTAAGGGAAAACATTTTGCAAATATTTAGGGGTAGTAACATTTTG
CAAATATTTAGGGGTAGTAACATTTTGCAGACATATAATATTTGTTATCTCATAGCCATCATCTTTGGTTTTTATCATAA
TAGTCATCATGTTTTAATGGGATTATTGACCATTATTCATGCCAATCCAAGAGTTTAAGGAGATGTAATGGCAATCCACA
ATTGACAATACAAAGCAAAATTCTTTGAGATGTTTTAGAGTAGAGAGTAAAAAGGGCAGCATCAAGAGTACAATTTGCCC
AACAATTAACTACATTTTGTTGTGATACTTTGACATACTATGAAGATTCTATATGAAAAGCTCATGCAAAAAATGCTAAT
GAATAATGGTTGTGTTAATACTACAGTTCTGCGATAACAGGGTATTATTGATTTGCAAGTGCTGGTCATTAAAGATTCAG
GCAGTAAAGATGAAGTTGTCAATACATATATCAGATATTTATCGTATACTGTATACTTATATGCATATTTTGCTATACAG
TATCATTTTATTGTTGGGCAAAGGGAAAATAGAAAATCCAAGTTCAGTTATGCATAGCATGTCGTCAGTCTCACATATGT
TTTCTTTTCCTAATTATGCTCCTGTTTATATTTTGTTTTGACAGTTCAATGCCCCATTCATATTATTGTGTTGAGTGGAA
CTTAGAACACATATGTGATAGAATTATGCATGTTTGTTCACCATCAATCTAGCTAATTTCACCTTATCCAAAAAAAAAAT
GGAAATATTTGCTGTGTTACATTGTTGCTACCATTCCTTATATTTAGTAATGTCACGGGTGTATGTAGGATTCATCTCTG
GTTCTTACTGGTCCAAGCCGTGCAATCCTATTGATGGACCCTATTGAATTTGAAATTGAGCTAAGAGTCAAGGGGACAAG
TCCCTCCGAAGATAAGATCTTGAGCGCTGAAGCATTTGGGTATAATGGCACCGCTCAGAGACACAGATGTGGCTCACTCC
GCAGTATGTTGTTATCAGGAGCACGCAGCACATTGGAGTTCAAGTATGCTCACATTCCTGTGGCATTGGAGGCTACAATC
AAGGTCAGGATTACAGGAGGTTTAACTGATTTCTGTGGAAAGTTCATTGCACATACTGCTAGTATCAAGGAAGATGTCGT
ATTGCTGGACTCTGGAGAAGAAATGGTGGCTATCTCCCATGATGGAGCCATTCATTTCTCCCGCAGTGTGGTTGCAGTTG
AAGGAAATGGTGTGCTGACTGTTGGTGTTCATGCAAGGCAGAGTGGTGATGAGAATAACAGCTGTGATTACAAGAATTTT
ATCCCGGTAAGATGTGGACGGAGTCATGACACACTTGATGTTGGATTTTGCCAGATGAGTGTTGAAGTTGCTTGGTCGCT
CATGCTTTCATATTGAAAAAACATAGGCCCGATAATATTATATTTTGCCAAGTCTAGGCCCTGATAATTTTGCTTGCTGT
GACACAAGCTGTTTGCTCGATGGCATTGTAATATACTGATATGACAATACTTAATATTCGGTGTTAGTAGTTCATTTTTT
TAGAGAAGGCTATACGGCCCTGCTTTTTATTGCGTTCTTATAGAAAGCAATATGTCTTTATACATAGATTCAGAGATGCT
GGGGCCACCAGCTTGCCAGACACAGCACAGGAAACTGACTGTAAACACACTACCAACTACAGGACGCATAAGCAAGTGCT
ATAATAGAGAGGAGTATTATCTCTAATTCTATCCATATAATCTACTACTCATAAATAAGAAGCAATATATACAATAGGTC
ACCTCTAATACACAATACAAATACTAGTACTTCTAATACTATCACACCTAGGGCTTGTTTGGTAAAGCTCCAACTTCTAA
ATTTAGCTTCAGGAATTGGGTCTGGAGTGGAGCAGCTCCACCTCTCTAGTTCATTTTTTGAGAGTGTTTCACTCAGCTCC
ACTCCCATTTTAGGTGGAGATGAAGTCATGAAACTGTTTAGCTGAGCTTAGTTTCAAAAGAGGTGGAGCTAGAGCTGTGC
CAAACAGACCCCTATTTTGTTACTTCTAATACACACATATCAATACTTCTAATAATACTCTCACACACATATGGAGGTTC
TCTTAGTACATGAGAAGGTTGCTCAGCTATATGACACTTAGGGTCATCCAATCCTACGTGACACTCATGTCAAAAAAAAT
AAATAAATCATACGTGACACTCTTAAAACAGCACATCAAGTATTCCTGTATATCATCACTCAATCGTACGTGACACTCGT
GTTAAAAAGAAAATCGTATATGATGCTTTTAAGGACAGTACATCAATTATAGTAGTTGCTCCCAGGCTCCAAACTCCAGA
ATGCCAGCAAAAGCCAAAAGCAAAACTAAACCACCGGTAACACCGATGTTAGCCTATTCCAGCTCGCGAGGGACGAAGAC
CGTTGACAGCATCTTGTAATGCCGCCGCCATGGACTCCAGAGTAGCAACGTCATCAGGCTTCAGAAATGATTTCCACTAC
AACAGTAAGCCAATCAAACGAAAAAAGAATAATTAGAGGTGAGGAAACCATCTTATCCCTGAAGACCATGTCATGTCTAG
TTGACCAAAGAATTCCAACATAAAGCAGCTAAAAGAAGGCATCCAACTCTAGATTTTTTAAGCCTGTTTTCCCCAGAACC
AAGCAGAAAAAGTCATCAAAATCATGAGGAATTCTACTCTGGCCAAGGGCGTCTCTACAAATACACCAGGCAAATCTAGC
AACGGGGCATTTGAAACAAACTAGAAATAACTGCGCGCTTCGCTGCACCCGTCCAATATCAGAGGAGAAATAAATTTAAC
AGCATATAATTTTTTTATATAGCATGTATTTGGATCATTTACATATTAGAAATGAGCAAGGAGAAACAGTAATTGATGAA
ATAGAATTGTCTTACAAATTTCATAAATTAAACAGTGCAC