miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0008301
Located between position 9362570 and 9362705 on chromosome 11 strand -
mature miRNAs for MI0008301:
         osa-miR1883b (MIMAT0007852): ACCTGTGACGGGCCGAGAATGGAA

References
[1]Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"




>promoter (3kb upstream pre-miRNA, by PMRD):
TAAACCCTACCACTATGTCCAGTGTTTAATTTCATTTGCTTTCATGCAGGAATTGAAGGTCAGATTTGGTATTTAAGCAT
CGATCGTTAACAGACTGGTTATTCAAAACTGGGTGTGAATGGCAGACATGCTACAGAAGAGGTGGCAAAACTAGCAGTTT
TGTCCCTTGCGTCGCTACATCGAAGAAACGGTTCCGCACCTCCTCACGCGTTGCATGTTGTCAGGGTGAATATGGACAGA
AGTAGAGCGCTGGGATAACATTGATCTGCGAATAGAAGAACGGGATCAGTGCACAACAGTAGAGGAGTGGTGGAACTGTC
TAATCCAAGTACCGCAAAACCCAAGTAAACCATTGAAATCGCTGATCATCCTGGTTGGCTTGGAGCTCTGGTGTGAAACA
AATGCGAGGATTTTTTTTTTATTTTGCCGAATCACCACCAACTGACTATACCTACCTCTATAATTTCCAAGATAAAAGGA
GCGTGCATAAAGGTGAGAGTGACAAAACTGCAGGAGTTAAACATATGACCTTTTTTGGGCCCTCTTGTTTGAAAGTGCCC
TGTAAATATTTTCCTTCTCTATCGATATATATGGTGGCAAAGCTTTGCCCTCCTTAAAAAAAAAAAAACTGAGCTCCCCA
TGTAGTCTAGATTTTCACTCATCATATTCTAAAAACATGGTAGTTGAATAACTTACAAAATATACAAGAATCAAAAATAG
AAAAATCAGCTTTTCAACTCACCAATAAGTAACCTGCTTCCAAGAATCTCAAACAGAGCCTGAATGTTAAGTACTATAGC
TGGAAGCAAAAAGACCAAGATACCAATGGGACCATGGACCAATAACCAGCGGTGCGGCAGACTGACGGACCGCCTCACCG
ACACAAAAACTCCTGCGCCGGCCGGCATGCACGGACGGACAACGTCTGGGTTTCCGTTTTGGGAACAAAGAAGATAGAGA
TTTCCATGTCGGTCAGGATTGATCTGTTACGCATCCGTTTCTATATCGCATCTCTATACGAGCCATTCGATTTGGCACCG
ACGACGATCCCAATTTTCCTCAATAAAAGGCAGCCCACCGTACAATGTGTGCGTGTCTCTCTCTCGGCTGATCGTCTCGC
CGCCGCTGCCGCCCATCGATCGCGCGTCGATCTCCACAGGTTGGGTTCCTGCACGTATGCACCTCTTCCTCTCCTCCTCC
TCCTCCCTCCTAGCTAGCCTCCTAGTCTGCGCGCACCGGCGGCGGCCTCTAGATAGCTACCACTCGCAGCACTAGATAGC
TAAGGGGGGCTATACTTCCTATCATATACCCGTATCGCGTATCCGTATCTCCGTAACATAGCTTCTTCTTTGTGGCCGTA
ACCATGGCCGCAATTAATTAAGCATGCTAATTAAGCCTTTTGTGTCTGTCTTTGTTCTCTCCCAGCGGCAAATCAATTAT
ATATATATATATATATATATATATATATATATATATATATATACAGAAAAAGAAAAAGGATCATGTTTTCTGGTTGTTGA
ATTAAGCTAGATTAGCCAGCCAAAGGGCTCTGGATCGATACTTACTAATGCGAGATTTTAGCATGGTTGATTTTAGCAGG
TGCATTGTTGCAATGTTACACGAAGGCCAATTCGTCACAGACGATCTTGCAAAAGCATGACTCTTTTAGTTCAATACTGA
CAAGTCCTTGTTCGATTTCCGATTTCCATGTCATATATATGTAATTCTTGTAATGTTTTTGTTGTGGGAGTGGCTCCGGA
TGGGAAGCACGCCCTCGTACGAGCGACAGCAAGAAACCTGGAGCCATCCACCTCGGGAGATTGACCGAAGTCGCTGGATG
CTCCGGAGGCCAGCCAGGGCCCCGGAGGCCATCCATGGCTCCGGAGACTGTCCAGGAGCTCCGGAAGGCAACTGATGCTC
CGGAGGTCGCCTGTGGGGCTGGAAGTGCCAAGGGGCCCCAATGACGAGACTGGTGTTCTGGACTTCAGGGGCACATGGTG
ACAGACAATAAATGTGCACTACGCCCTCTAACTGCCTTTGATACCGCGGCACGGGCAAAGTGATGCAGGCTAATACCCAG
AGGATATAGCCCAGCCTGGGTAACAGCCAGCACCCTCGGGAGACGCCCCCGCATCCTTAATGGGCGCAGCCATCATTGTC
ACTCTGGAAAAGTCTGAAAAACACAAGGCTGGCCCACCAGGCAGCCCTCTAGGGTCCACCTGCAAATTAGGGCAACTATA
TAATTTTCCCTTTGTAATCTTGTATAAATATGTAAACAACGTCCGTTTGAGAACACATTAAATACAGAGGCAATACACCT
CCACCTGCTGAGTTTTGTCCCAACAGTTTTGTCAATCTAACGATATGTCCTATCATCAATTTACAGGTTGTGAGGCGAAC
GACAACTAGAAATCATGCCGTGCGCTATGCTGGTGGCAGCAGCGGTTGAGGTCGCCGTCCCAACCCTGGCTGAGGCTGCA
GGTGCGTGCCACACACACATAATATATACATAGGCTCACTGTGAAACCGGTTTTTTCTTCACAATTATGATAATTTCATT
AAAAAAATAATTATGACAATAGTCACCGCCTGCTCATAACCAAATTTCCAACTCCAACCCATAAGAAAATAATGACCGAC
TGCCCACCCAGACTATCCTATAACTGGCAGTGAAACTGTTTCCAACCAAAAAAAACAAAAGAATCGTTATAGGATTGTTC
TTATACTGTGTCCATGCCAAGAATCTTTACATTTCTCTAATGGAAATGGAGGGCTTTGCCCTTTGCTCTAAAAAACAATA
CTGTGTCCATGCCTTATTTTGAAACAGTAAACAATTTAAGGAGATGTTTGCAGTGTAGGATGACTTGATTAGTTTAGTTT
TGCTGGACTGTTATTCTTCTCCATTGGAAAGTTAAGTGGCCTTTTCAAAAGGACAAGAAAACACAAGAACATTAACTAAA
AACTGGAATCAGCTGATGATTCCAATAGATTGGTGAAAAC