miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0010550
Located between position 38763246 and 38763348 on chromosome 01 strand -
mature miRNAs for MI0010550:
         osa-miR2090 (MIMAT0010045): AACTCTGATTCTAGAATTTTTG

References
[1]Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"




>promoter (3kb upstream pre-miRNA, by PMRD):
CGTCGACCGGAGATAAGCGGCGATGGACGGAGGGGCTTGTCGATGGCGTTGGGCAGCGGCGTGGTGCCCCGTTCGCCGAT
GGTCCTGGCACCGGCGTTGTCTTCGTCTTTGGCTCGATACGACTCGGATCTGGCGTTGTGGAGGCGGGAAGGAGGCGATG
ACCCGGATCTGGAGTGGTGGAGGCATGGCGGCGACCGTGGGCGGTGGGTGAAGGAGGCGGCGACCGTGGACGGTGGGCGA
AGGAGGCAGCGACTCGGAGGCGGTGGGCGAAGGAGCCGATGACGGGGCGGCGGAGAGACGACGGCGGCGACCATGGGGCG
AAGGGCGAAGGAGGTGGCGACCTTTGGAGGTGGGCGAAGGAGGCTGGCGGTTGGTGGGAAGAAGAGAAGAGAGACTGAGA
GGAGGAGGAGAGAGACTGAGCAGGTGGCGGTGGGCCCATGGGTGGGGGTGGGGGTTCCTTTTTTATATGTCAAAATTGAT
CACCTTTGACGGGTGCAAACTTAAAATCAGTGACGGGCCAGAAGTCATATCCGTCACAGGTGACGGCCCATCACCTGTGA
AGGGTTGTAACTCCCTGGCCCGTCACAAATGAGGTCATACCAGTGACAGGTTGGAAGTCAAACTCGTCACTATCTTACCT
GTGACGGCTTAAAATTCCAGCCCGTCACAGGTGAGGTGATACTTGTGACGGGCCGCGGCCAGATGCCTCACCGATGATGG
TAAATCTAACGACCCGTCAAAGGTGACGGTCATCTGTGACCAATTTATAAACCCGTTACTGGTGTGCCGTCACAGATGTA
GGGTTCTGGCGTAATACGTTATTGACCACCTTGTTGGGGGCTTTATATGGTTGAACAACTTTCATTGGTCTAGGGGTCTT
CACTTGGTCGATATGCGTTTCGTGAGGAATGGGACCCATCTCAATAACAATAGACGTAAAAGTATGCCATTAATACTAGC
TAAATACCCTACTTTGACACTGATAAATATTAAAAATTATGCATTCAAGCATTGTTTGGAACAAATTAAGTGCAATTCAT
CTCTACATATGTCTTTGCGTGACAAACTTGCATTTTATATATGAAATAAGATAAGAGTAAATTGCACAATGGGCAAAGTA
TTACCTAAGTTGCGCACTGAACCATGTCTTAGCAAACCTTTTCACTTAACACCATATCTTGTTACATTATTTGCACTTCG
GATCGGGTAATAAGTTAGCTGCTTTGGGCAGCCTCAGTCGATCCCTTGCAAGGCCAGGCGGCTAGCTGCACGCGACGGTT
CGTCCAAATTAAACTGTACGCGTTCGAGTCAACTATCTATGTAAATGGCTCATGTTGGATACACTGGTCCCGATTTTTTG
GGCAGGAAGCACAGCTAACTTGTATACCCGATCCAAAGTGCAAACGAATGAACAATACATATACATGGTGTTAAGTGAAA
ATGTATGTAAAGACATGGTCCAGTGTGCAACTAATACATGATGTTAAGTAAAAAGGTATGCAAAGACTTGGTCCAATAAA
TTTCTAAAAAAAAGACCTGGTATGTTAAACTTAATTAGGTAATAAAACCTTGCCCACTGTGCAATTTACTCGTATCAGAT
ATAACCAATGTGTTACACTATTTTGCAATCTTACAAACACGTAAAAGAGTATTCCCTCCGTTTCACATCATAAAACGTTT
TTACTTTGGTTAAAGACAAAATAATCTAAGTTTGACTAACTCTATAGAAAAAGTAGTAATATTTACAACACCAGCATAGT
TTCATTAAATCTATAATTGAATAAATTTTCATAATATATTAGTCTTGGGTTAAAAATATTACTACTTTTTCTACAGAATT
AGTCAAACTTAAAGTAGTTTGACTTTGACCAAAGTCAAAACATCTTATAACTTAAAACTGATAGAGAAGTTAATAAAAAA
ATATAAATACGGTTGGTTAGGTCACCGCCACCACCCCCATCGTTACCTTTTTTCTTTTAAGAATACTCTCTCTGCCCCCA
CAACATATATTGTGCACCCATGTTTTTAAGAAAGTCAATATTCATAACTCTTAACTAATAATCAAAATAGCAATATGTTT
AATATCACCCAAGTGATGCTATTAGTCTCGTATTGACAGTGTGCTCATATCAAGTTGATATATTTTGTAGTTGTTCAGGA
GAAATTATAAAACAAATAAACATTCAAAGAAGTATTGTATTAATGAAACCATCTAAAATACATGTATACCTTACATTTTG
TGACGGATGAACTAGTATAAACAAATCCTATTATCAGAAAAGTTGGAGGAGATCCCACAGGGCCAAGGGCGAAGATCCAA
CTAGAAAAATATGATTAACTGAAGAAAACAATAATTAATTAATTATATATTTGGAGAAACCAAAAAAAATTGTGTGTGTT
CTGATTTTTTTTTTCTTATGTTAATACTGGAGAGTTTGCGCGGCAAAAGAAAAAAAAGCATGTACTACACTTGGTCGTTG
ATACGTGTAACATGCACTTCACAGTTAGCACTACGAGCAAGATCATGTAAACAATTGGCATCCCTAATCTCTAGGCCAGT
ACAGAAGTGCGGTCAAGGTGGCCAAGTCGTCCCACTGGTCCCAATCCGGATCAACGGCGCCACCTTGATCCATCAGCTCC
AGTTGCTGCATGGAACTTCCTGATCCGTCGTTTTCCTCGGGTGACGCCGCCGCGGCAGCCATGGATGGCCCCGGGTTCTC
ATCACCACCACCCGCTAGCGGCCGCCGATCGAATTGCCGGATGCCTCCCGATCTGGTGTACAGTCGACACAGGCTGAACT
CGCTCCTCAGCTGCAACAGCGAAAGCCCACAAGACAAATTAGTCGTCATTGATCGTGTTTTCAAATGTACTTAATTACAA
GTCAATTAATTGTCTTCGTACATGAGTAAATCATAAACAGTGCGTCAACCATGCAACCATTTAAAAAGTTGCATACGGAC
GGAGTCACGAATCATGCATTCGCCCAGTTGCATACTTGCA