miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0010552
Located between position 10113734 and 10113836 on chromosome 12 strand +
mature miRNAs for MI0010552:
         osa-miR2092-5p (MIMAT0010048): CAACTGAAGTCGGTGTTTACT
         osa-miR2092-3p (MIMAT0010049): ACCAGCATTCCATTGGCAGAGG

References
[1]Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"




>promoter (3kb upstream pre-miRNA, by PMRD):
GGCGCCGGCGTCGGGCAGGGAGGGCTGCGCTCCACCCCCACTGCTGCGCGCTAGTGTGAAGATGGGAGAGGAGACGTGGA
AAATATTACCGAACCGTTTTTTCAATAATGGCAGAGGTGGGTAATTTTTCACTCAAAAGCGAGTGCAAGCAGGGGTAGGG
TGTGCTTTTGGATTTGTAGTGCACTAAAAGCAGCTTTGGAGCAAAAGTACTTATGGCTTTCGGGCCGTTTGGTTGGCTTT
TGACTTTTGCAAAAGCAAAAACAGGTTGAGAAGCCCAACCAAACACACCATTAGTTTCACTAACATAATAAATTAGTAAA
TCTGAGAAAATGTCTTCTGCTAATTATTTTTGTACCGAAAACACTAAAATTTTAGAAAATCATAGAAAATTAATTTTAAC
TCTAACTGAGGTGAACCAAATTTTGTTATATTTATAATAATTGTATTTTTAATATTGCATACCCGAACTTAGCATCACTG
TTTTATAAAATTTCACTAATTTAAATTTAAATAATAACCTTTTGTATTTATCGTACTTAAATAATTAAAAAGCAATAACT
CGCATGTACGACATCGGATTAAGACTTTTCCTTTTCCCATGTTCAACTAAAATCACCCTCTACATACTGAATTGTTCACG
CATCTAATATACACTCAACTTTAGTTTACATTTGCTAGTATACAGTTGTGTAACCAATACCTCCTAACAGTGCCCTCCTG
GTGTTTCGAGAGACTACCACTGGTTGCCGAGTTTCTTATGACAACCTGTCATGGCCGTCCAATCGGGGCTAATTACGGAG
GAGTACCCTCCCAGGAAAGTATCTTAGGAACACTATTGGAGAAGTGATCTTTGCTGGGTCAGGCAAAAATCACATTAGTC
TCGGTACGAGTAGGAACTGGGAGTAAAAATATCTTTAGTCCCGATTTTAAAGCCCATGGGTACTTTTTGATCTTTAGTCC
CGGGTCAATAGTTGTCAGGCCCCCAACGAGCTTTAGTACCGGTTGGTAACACCAACCGGGACTAAAGATAGATCTTTAAT
CCCGATTGATGATACCAACCAGGAATAAATATCTCTCTCCCGCGTTATCCCATCTCTCATGCTCTCTCTCTTCCAGATAT
CCTCTTCGCGCGCAGCCTCCTCTTATCTTATTTCTACTCCTCCTCCTCCTCCACTCATCCTCCCCTCCACTCTCCTTCGT
TGATCCCTCTTCCAATCCATGTTTACGTCAGCGCAGGCAGCGGCAGACGGCCGGGGGCGTCGGCGGGCGGGAGGCGGGGG
GCGGCGGACGCGCTGGGAGGGGAGGAGGCGGGCAACGGGTGTGCCGGGAAGGGAGGCGGCGGGCGGCGGGCGTGCTGGAG
GGAGGCGCGGGCGGCGGGCGTGTACAGAGGGTAGGCGGCGGGCACGCCGGAAGGAAGCGGCAGGCGCGCTGCGCACACAT
ATGGGAGGCGGCCGGTGGCGGCACAGACGGAGGGTAGGTGGCAGGCGGCGGGCAAGACGGAGATTTTGGGGATTTTGGGG
ATGATTTGGGGCATGATTTTGTGATGTAAATTTGTGGATGATTTTTAGATGTTTTTGTGAAGTTGTGGATGAATCTGTGA
TGTCAATTTTTGGATGATTTTGTGTGGTTGATTTTGTTGTTGAGTTTGGCGTGAAATCAATAAGCAAGTAGCAAAAAAGG
TAAAAAAAGAAAAGAAAAAGTTTCAGCCACGCGGCGCTTTTATTTTTAGTCCCGGTTAGTAACCTCAACTGGGACTAAAT
ATGGATCTTTAGTCCCCGTTATTTCAACCAGGACTAAAGAAGGGCATCATTAGTCCCGGATTCGGGGTCCCAGTTTGCAA
CCCGGGATTATAGGGGGTTGCAAACCAGGACTAAAGACCACTTCTTCAGTAGTGGAATACCCGTACTGAGCTGCCACCAT
CAGCGGCCAACATCTACTGTCCCGCAACATATATGGCCAATTAATGATATCTAATAATCTAAGCACCCTGCTTACATTAT
CAAATACTACTCTATACCCTCGAGAATAATATAGAGCAATCATTCGTATGAACATTAAACCCACACCACTGCACCTCTCT
GGTAGGCTAGTCACACAAATATATCAGCACAAATATAAATGAAAGCCAGTACTGAGACAAAGTAAAGTACTGAAAGTATA
TAAAGAAGAATATGCTATTAATTCCGAAAGTCTTACAAACGAAGAAAGAAAAGCTACTAGAGCCATACCCGAAACCTTCC
GAAGACTCGAGGACTCCAAGAACTATTCTATTCCACTCCACTTAGCACTAGAGCACTAAACTAAACTTGAGAGAAAGATC
AAAGCTTCTCGCTTGAGTTTGCATTGAAGTGGAGAATGAGCACCCTTTATATAGCCTCCAATGATGGTTATGGCAGTTGG
AATTGTTGGAAAATTCCCTGCAACCGTCATTGGGAGTGCATCACAAGCGTACACGTGGAGGCCCGAGCTGAGGCATCGCT
GCCAGGGTTCGGCCGATCCTGGGCTGGCCCAGCAGGCCTCCACATTTGGTCAGGGGGCTGACAGGTGGGTCCTCATGGCA
GTTGTGGCAGTTATGGCGTTTTTCAGGACGGTTACACTTGACATGTGGGCCCCTCTATTCTTAAGCTTGGTTAGGAGTGA
GTTTTCTTCATTTCTTCTCCATTTATGTGCTAATCTCTACAAACAAATAATACTCCAAGTACATGTGGAAATATATTATT
CTAAAACATATATGCATTGTAAGGATGATATTGTTATAGTTCTAAAATACCAACTTACTGCATTCAAGGCTATATAGAAT
TGTTTTTTTTTACTGGAAGGACTGCAGGGCTTTGCCTGGCACTGTATTTTCATTAAAGAAGGGAAATATTTACATGGCTA
TATAGCATTGTTGATAGCTGAAAAGTTAAGTTGCTGAAAATCAGGTGTCTATACTTTAGAAAAGTAAGAAAACAAAAGGT
AATGGAGCTTGGGGGCACACGACCTAATACAGTAAATTTA