miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0010554
Located between position 29773769 and 29773840 on chromosome 02 strand +
mature miRNAs for MI0010554:
         osa-miR2094-5p (MIMAT0010052): TGGCTGCTAGGCTCCTGGGTG
         osa-miR2094-3p (MIMAT0010053): CAGAGCTGTGGCATCCACGTCG

References
[1]Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"




>promoter (3kb upstream pre-miRNA, by PMRD):
ACAGCTAAAACATCATCAACAGTGAGGCCATTCCGCTCACAGCTACTATTACCTGGACCTATATAGCCTGCTGGTTTTGC
TGCTTTACCAGGCGGTATAGGTGCCTCTACGTCATACGTACGTCCAGTCCAGCTCGGCTTCTCTCAAGAGTGTTCTGTAA
GGCCATTGACAATGCATCTATAGATGGCATTCAGCCCAAGCTGTCACGTACGTAGGAGATTCCTCTCCATGTTCGTGCAA
GTCATGGCCTCCTGAAGTTCCTCGTCCCCCACAAAGACCTGCATAGGACCACTCAGCGTGGGGGCACCATCGCTCGTGCA
ACCGTGTTGTGAAGATCGTGTCCATCGCTGGCCCTAAAACCCAGCTTTGGTGCCTCAACGAGGGACATGGAGTAGCTCGC
CGATTCCAACGGCCATCGCACTGGTCAAGCAAGGCCAGTGAGTGAAGGGCTTCGATTTGCGCCGGAGAAGAGAGGGCACA
AGCGCACGAGACGCCTAGAGAGCTCGTCAGTTGCGCCTTGGAGGGTGCTCGTTCCTCCGTCTACTTGTTGTCGCAAAGCT
CGTCGTTGTGCCGGGCGCCGATCACTGGTGGAGAAACCATCTTTGGTCGGTCGGCCAAATTCTACAATAGTCCCGGTTCT
AATAAAAACCGGAACTAAAAAGCATCTTTAGTCCCGATTTAAAAGTTGAGGGGTACTTTTTGATCTTTAGTCTCGGTTGG
TGTTACCAACCGCGACTAAAGATCATTTTTAATCCCGGTTCAATAAGTCGTGGGGTTCAAGACAGACCCCAATTATTTTT
ACTCCCGGTTGGTATAAACAGCCGGGACTAAAAATAGTCCCAGTTGTTTATCCCAACCGGGAGTAAAGAGTACCCCGAAC
CGCGCGCCAAATATTATCCGCGTGCCACCAAAATAATTGTTTATATCAAATATTTTTACTCCCGGTTGGTATAAACAACC
GGGACTAAAGATGATCTTTAGTCCCGGTTGTTTATACCAACCGGGAGTAAAGAGTACCCCGAACGCGCCACCAACTCAGA
TATTATCGCGCACTCCTCTCGATCTCCTCCCCTCTCATTACTCCTCCATCCCTTCCTCTCCCCCTTCATCCCCTTCCTCT
CCCCTTTCCCCTCCTGTTCCTCCCCTTCCCCTCTTTGAGAGGCGGCCGGGCGAGTGGTTGCGACGGCCGGGCGGGAGCAG
CGGCGCCCGGCGGGAGCGGCGGCGGCCGGCCGTCTGGGTGCGGCAGGCGGGCGGGCGGGCGCGGCAGCCGGGCGGGCAGG
CCGCCGCCGTGCGGGCTGGCGCGGCGGCCAGCCGGGCGGGCGGGCGCGGCGCCCGGGCGGGCTGGCGCGACGGCCGGCCG
GCCGAGCTCGCGCGGAGGCCGCGAGGACGGTGGCCGGGAGGCCGGCGGCGCCATCCTCTCTGTTGCCGAATTTTTTTTTT
TGAATTTGTGATTCATTGGATTTGATCTGTGATGTATGTGATCTGATCTGAATATTGGATCACATATTGGATCTGATTTG
GGAGTTGTGATGTATTTATTTTAGGATTTGTGATATATTTTTTGTTTAAGATTTTGTGATGTGATGTATTATGATCTGTG
ATGCATTTCTTTTCAATATGTGATGTATTTCTTTCCAGATCTATGATGCACTTTGATTTGGGGATGATTTGGGAATATGA
TCGGGGATATTTAGGGAGCAAATCGATTTTAAAAAAAAATTAACCGGGATTGCTCCTACCATCTTTAGTCCCGGTTGGTA
ACACCAACCGGGGCTAAAGATGGATTTTTAGTCCTGGTTATTTCACCCGGGACTAAAGATACCCATCTTTAGTCCCGGAT
TCGTAGTCTCGGTTGTATAACCGGGACTACAGGGGTCCCCAACCGGAAGTAAAGCCTCTTTCTCCACCAGTGGATCCCTA
CTCAACCACCTTCCTTCCTAACTTCTCCACCAACGTTGGGTGGCTGGGAGGAGATGGAGTTGAGGGAGGAGGGAGGGGGG
AGGGGGTGCGCGAGGGGTGGCGCTGCCATCATGGTCCATGTACCCTAAGATCGGCGACCGACATGGCCACATGAGGTTGG
AGGGGCTGGATCCGGAAGTTGCAGATCCTTGACCTCCAGTGCGTCGGACGAGGAGCGGCTTGCCTTGGCCTCCTCTCCGC
CGTTGTGGTGTTGCCTTGATTTATTTATTTTAAAGCGGAGTAAGTATCAATATAGTGGTGCCAATTATATGAATTATAAA
ATGTGTACTAGCTCGATACTAAAATAAGTTAATCTAGTATTGAATGCTTCACATCTTAGTATTATGAATCTGTTCAAATT
TATAGTATTAGGATGTGTTATATCCGATACTAAATTAACTTATTATGGAACGGAGGAGGTATAAGGTACTTAACAAATAT
TCAGTAGCTAGTGACATACTCATGCTACTACTATACACATATTATAGGATGAGGATATTGTGGCGATGTGTCATGCAATT
GACATAGCCAAGCCAAGAGGGCTGTGTGGCCAGCGTGTCAGCAACAACAACATCGCTTTTTGGCTGAGTAAAGGCCGTGT
GTTTTCGCACAACTTGCAGCTGTTCCCTGTTCCCATCCCACAAACTCGTAGGGCCTCTGCCCACTCATTGATCAGTCAGC
GAGTCAGATAACGACATGTCAACCCTGTAATTAATTACCCTACCCTGCCGGCCGTGATCAAGTAGATGGATCACCGGTTT
CTCGGTTAGTAGTGTACCCCGTACTCTCCCTATCTCGTAAAAAACGAATCTTAGTACTATGACGTGTTGTATCTGATACT
AGTTTGATTTTTTATGGGACGGAGAGAGTAACTCGTTTTAATGGATTACGTACCCTGCCCGGGTCATGTCAACAACATGC
TCAAGAATACGGTAAAAGGACAATACAGTATAGGCAAGTCGATTTCGCAGCAGTACATGCGAGTTAGGAGTATGATTAAC
AATGACGCACACACAAAGCAATGAGTAGTCAACGCATATC