Basic information from miRBase |
hairpin accession number: MI0010557 |
Located between position 9054603 and 9054779 on chromosome 01 strand + |
mature miRNAs for MI0010557: |
osa-miR2097-5p (MIMAT0010058): AGAGATGGGACGGGCAGGGAAG |
osa-miR2097-3p (MIMAT0010059): TTCTCTTCTTCGTGTCGCATTT |
References |
[1]Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds" |
>promoter (3kb upstream pre-miRNA, by PMRD):
AGAGCATATAGCACCCTCAAACTATCACCAACATGGCCTTGCATGACACACTTCTGATGTTCATGGAAGTATAGGCAAAT
TATCATGGGGTGTACAATATACCAGCACCCTGAAGCACCATACATAGCCCTTGCACACTCTGGAAACAATTGATCCCAAT
AAATCCCAAAAGTATATGGGTGAAGTGATTCCACACTAATTAACAGAGTTGTATTGTATAAAAACCAAACAATAATCAAT
ATTGATGCAGAAGTACTTAATAGCACCAATTGTGGTATACATGGTTTTGAGATCTGCAGTTAAATTACAGCAGTTACACC
AATTGAGTTTCACAAATAAAAACGACAGACCTAGCTACAATGTACATCTAGTGTAAACTAAAATGCAATCTTAAAATAAA
ATCATGTTTACCTTCAAGCCAGGGCAGATGGATTGAAATTCAATCTTTAAGATTCATAAAAATATTGCCCCTCAAATAAT
TCCTAGGGTGACAAATACATTCTGTATACAGAACTAAAAAACTGGAGTCATTGCCTCACATCTTTTTTGAGAAGGTTGAA
CCAACTTAGGAGCAATTTAAGTAAACAATATTCATTCAAACTCATTTTCTTTTCTGAATCTATGACCAAAATAAACACGG
TTTGTTGAAGTTTAGTGATCCAGCAATGGGAACAATATTTATCATGTAAACGCGCCTTAATGAGGACAAAGTTTGTGCCT
TTCTTATGAGCTTCTCATATCAACCTGCCATACCACAAAAAAAATGCCATACAAATGACAAGGCCCTGAGCTTATTTATT
TTCCAAGACATAAGAAACAAAGAGTGATGGCTGAAATGCATATATAATTTAGTATGAAACTAAAGAATGTAGAACCCAAA
ATTTCCTAGCACTGGTGAGGGGATAAATGTACAGGATACTTCAAAATTTATATCACGCATAGAAGAACACAATATTGATA
AAGATACTGAAAAATGGCAAGAACAGGAGAGGTTTTATGCGATCTTTAAATATTGATAAATAATACATGGTTAATTGAAA
GTACTAAGAATAAATTAACTCAACATTCTGATAGTCCTGATCAGATTTGTAGCCTTATTTAGCAAATTTTAACTTCTTTG
CTATGAGCAAGCATTGCCTGGTGGTTAAAGTCACAGATTGCACACCCGTATAAAAATAAACTGCAAAGGAGCAGCTTAAA
TACCTCTGTTCATTTGGTAAGTTCACCGTATGCTATATGTAGTAATCTCCAATATGGGACCTTTCATGATATCCAAACCT
GAACAATTAAAAAACAGAAGCCTCCCAATTAGCTCCTAGAAACCACAGTTCACAATAGTACACTGAAACAACACGGAAAA
AGTTGCTCTTTTTTTCCTAAAGTAATTATTTAGTAAAAGCTTGTAATGCTTCTTCTTTACACATTCCACAATAATTGGAT
TGTCACATGCTATAGCTAACAAATTCAGGGGAGTGTACGTCTTATGGGACAAAGGGTCTATGGGAGCACTATTCATTACA
TGGTACAGTCGACATGTAATATAACAGCTATAATGATAATGACCTTATGATAGTAATGAAAAACAGATGTATACTTCAAT
GAAAACTCATGAGCAAGCAAAATAATGAATAGCACTAAGCATGGTTTCTCAATTTCTCTTCTGTCCATAAAATTCCTCAA
TTTCTCTTCCTCTCCCACAGTGAGGATGATAAGCTTCACAGCAGTCCCAGAAAGTGAATTTTATGGCAGAAAAGGAAAAA
TCATAATTTGCCCTGAAAGCAAATGCAAAAAAGAGCCTATGTGTATATTATCATGGGTAAACATATATGACTATTCAGCT
GAACCCGTTGTGTGCTGGAACTAGTTTTGCTGAAAGATGGTAGTGTTGGTTATGGGACCTGGCATTCTTCACTAAAATTC
CATTTAAGGTTTTATAACAGAGTAAAAAAAAACTGATGTTAGACACTATACTGAACCGATCACTGCATCCGGCAAGCTGT
ACACGGAGCCAACCAAATGAAATTATTCGTGTTGGCCATTTCAGTTAGCCTTTATGTACTTGAATAATAACAAGCAACAA
GAGCTAATGATCTACTGTCAGATGGGATCCAAACCGCTAGGCAATTCAACCAGTCTTATCAGAAAGCTTGTCTTTATCAT
GGATTGACTATACATGTTAGCAATTTCTGTTGCATATTCTCAACTTGGACGTATGCATCACATATCACCAACTTGAATGC
CTACACCACAGATCTATATAAACAACGAAATGAGGATAAACAGGTCTTACCTTCACAACAGGGGCATATGAAGAGGGGAA
TGGGATCAGTGCGGCGTCGTGCGATCCGGCGCAAAGAGGACCACCGTGGAGATCAACGGAGACAAACGGATCCAGAAGCC
AGACACCTTGTCGATTGCAGACTGCCATTGCGCGTGGAGAAGGGGAGTCGGCGATGTAGGCCACCGCGGAGTGCAGTGGT
GGGCCCAACTTTTTGAACCTGTGTATTCGAAATGGGAAGGGTTAAAAAAATTGTTCATACACCTAAAAGCCTAAAAATTA
GCTTGTATAGTTCTGAAAATTAAACAATTATGGTAATATGGTATGAACTAAGCAAGCAAGTATACTAAATCAATGAATTG
TAGTTCCCAATCCTAAAATCTTCATTACAAGTATCAAATTTTGCGATTTTAGTCATAGAGACAAAAAAAGGAATAATGAG
TTTTATATCCTTACTGTCGATGCTAAGTATATTTAAACATAGAGACCATTATAAGTCAGTCAGATGATATAATACTAGTA
CTCTAGAATAAAATGTCATGAAAACTTGGGCCAAGAACAATTCTGTTATATAATTTCTAGATGAATGAATAATATAGTGT
ACTGAAAACTATGATGTACCAATCAATCAAAACATAAATGATTCAGGCATTGGATTACTGAAGGAATTCCTGAAAGTTGA
AAACTCTTGAGAAATAATCTGGTGAAGTGGTGATGACATG