Basic information from miRBase |
hairpin accession number: MI0010558 |
Located between position 18009013 and 18009084 on chromosome 10 strand - |
mature miRNAs for MI0010558: |
osa-miR2098-5p (MIMAT0010060): TCCCGTGGAGGCAGCCGATG |
osa-miR2098-3p (MIMAT0010061): CGGTTTGTCAAGCGGAGTGC |
References |
[1]Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds" |
>promoter (3kb upstream pre-miRNA, by PMRD):
AAAAAAAATTCATTTATGACTTACCAAATGAATTGCCACGTTTGAGCTCTTGTCATGCTTGGCCGATACAATCGAAGGTG
AGGTGAGCTAGTTTTGTTGATGTCCAGTTGCAGCTACAGCAATATATATAAGGACATGCAACGGCTAGTACTTGCTTTGA
ACGCCAACGGCTATCTGTTCAAATTCAAACCGGAAGAGAAATCCTGTATTTTTCCTATAGCACTATCAAAGGGCACCTTT
CATTTTTTCCTATGTTTTTGATTCCTGCGGGATTGAAGAATCATACTACTTCAATTCCTGTGTTTTTCCTATTCCTGTGT
TTTTCCTATCCTGCGAATCAAAGGGGCCCTCAAAGTGCATACAACCTTGCAGTTTACCATGGCTCAAGCCAACAACAAAT
AGAGATTCCAAGCAATGCATACAAGTCTAGGAGCTTAATGAATGCTGCGGCAGCAAAATGCAAGCATGTATAGCTTAGCT
TAGTCAAAAATTGACTTGACACAAGTTAGCAATAGCAGCAAAATGCATGTAGTAGCAAAAGATATAGCATCATGCATGAA
TTAACTTGATCGAACTTGACTGAGCAAAAGATTAAGTTTCCGCTTCCATCTCAGATTGAGTCCTCTTCATCGAACTTGTA
GACAGCTTGTTTTCCATTTGAGTCTAGCAAGCAAGGAGCAAACATTGTTGTTGATGAGAGAATTAAAAATAAGCATTACA
AAGAGCAAAGTTTGAAACTTATCTTACAATAGCCTATTGTACAGCAGTGGTGTAGCATTTTTTTTTCTTGCTGTAGTGGA
ACTCCTTGAACAAATCAAATGCATTAGGTTCTTCTTCATTGTATTTGTCACGCTGAAAACAACATATATGCATTATGTCC
AGCAAATGTGTACAGTGTTGAACTTAAAAAAAAAGGATGAATCTAGATAGCATCAAATCACCGTTGAGCTGATCAAATCA
AGCATGATCCATGGTATCCCCCAAGTAAGCTGTTTTCTGCACCTCTTTTTCTTTTTGTTGGCAAATGGATTAAAACATTA
TTCAGTTTTGAAGATATCTGAAAATATAGCAACTGTGGATTTCTGAAAATAAACACATTCTTTTTTTATCTAAAACACTT
TCTTTTTTTTATCTAGTTTCTATGAAACTTTCACGAATATTCTTTCTTATTTATGACTGCACTTGCATTTGCAGAAACAA
GGAATTCAGTTTTTTGTCAGAGATCATATTGTTACAGCATGAATTGACTTGCTTAACTAAATTAGAGGTTTCTGCATTCA
TCAGATTCAGGAACTTTGATAAGCAACTAGCATCAGCGGATAGAGAGAGATTGGTTACAGTTGGGATGCGGTCGCTCGCA
GTCGAAGTTGGGGCGCTTCACCAATCACCAGTCCCTCTCACAGTAGCAGATCCCGCCTCCGCCCTCCTGCACATGGGTGA
GGCACATGCGTCAAAACTCGCCAAGAAAACTAATGCAAGAAACAAAGATAGAAAGACTGGCGCCTCTCCTCTTCTTTTTC
ATCCGTGTCAAACCGTCCTCGCCCACCATGATCGCCTGCCGTGCTCCCTATGCTCACGCGTGCAGCAGTGCGTCGTCCTC
CTCGAGCAGCCTCTCGATGGACGGAGCTCGCGAGATGTAGGAAGCAGGCGCGCTACTGGGAGGGGATCTGCGCCCTGACC
TGCTGCCGGAGAAGGAGGAGGAGGAGGACTCGTCGGAGCTCTCCCTCGCCGGTGCTTCTTCCACCTCGATTCACGTCACC
GGTGGCTGCCCCGGATGCTGCGCTGCACGCCCCCTCCGGGCCCGAGAGGCGCCGGCGGCAGCGGATCCACCGCTCCCGCG
CCTGGCAGCGGTGGAGACGGATGCCGGCACGGCAAGCGGCGAAGGGGGAGGAAGCCGGCGCGGTGAGCGGCGCCCGGCGG
CGGCGGAGACGGAGGCCGGCGCCCAGCAGCGGCGGAGACAGAGGCCGGCGGTCTCATCTGCAGTAGCGCCTCGCGTGTGG
TGGCGGCTTATCTGATTTGGATCGGCTAGGGTTGAGGAACCAATGCGATTTTACTAAAATACCCATGGTGCATCCGAAGT
TACCACTAAAATATCTGGACAAAATGGTCATTTCACGTTGAAATTTTGATCAACATCCCGCCACACTGAAAGTTTGGCGC
CCGCTGCTCCTTCGGGCCGCCGGCCCAGCGTCTGTTTTTCCTCCCTCCTCTCAATTAATTTCAAAATATTAAAACTTCAA
ATCGAATTTTATCATACTAAATAAATTTATGTGAAAAAGATGTCAAAAACAAAGTTATATAACTTAATGAGATCTACAAC
TTTTGTTTTGGTCATTTTGCTATATGACTTTGTATCAAAAATTTGAATTTGAATTTCAAATTATGACAACTTCAAACAAT
ATTTTCAAATAATAAATGATTTCAACTGAAAAAGTCATCAACAATAAAGTTGTACAACTCATCAATATTTACAACTTTTG
TTTTGGTCATTTTTCTATATGACTTGGTTTGAACAATATGAATTTGAATTTCAAATTATGACAATTTCAAACAACATTTT
CAAATACTAAATGATTTCAACTAAAAAAGTCATCAATAACAAAGTGGTATAACTCATCAAGATCTATAACTTTTATTTGG
GTCATTTCTTCATCCGTTAAAGCGAATTGTAACATTATTCACAAAATGTACATATCTCTTATACAGTTTATAAACTATGA
GAGAGATATGTAAATTTTATAAATAATGTTATTATTACTTTGTCGGATGAAGAAATGACCAAAATAAAAGTTATAGATAT
TGATGATTTATACAACTTTGTTATTGATTACTTTTTCAGTTGAAATCATTTAGTATTTGAAACTGCTGTTTGAAGTTGTC
ATAATTTGAAATTCAAATTCAAATTATTGAAATGAAGTCGTATAGCAAAATGACCAAAACAAAAGTTGTAGATCTTGATA
AGTCATACAACTTTGTTGTTGACATTTTTTTTTCATTTCA