Basic information from miRBase |
hairpin accession number: MI0010562 |
Located between position 18189969 and 18190077 on chromosome 05 strand + |
mature miRNAs for MI0010562: |
osa-miR2102-5p (MIMAT0010068): GGGCAAGCCGCCGCCGCCAC |
osa-miR2102-3p (MIMAT0010069): CATGGTGCCGGTTCCGGTGGCG |
References |
[1]Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds" |
>promoter (3kb upstream pre-miRNA, by PMRD):
GTACGCTAGTCCAAATAATATAGCTAGAACATGCTAACCGGATCATTTTGAGTTCAGTATACAGTCTTCTATGTTGTTCT
AAATTTCTTACACATTTTCAAACAGTGGTGCTGAGTTATACTCCAAGTATGTCGGTGAAGGTGAAGCTTTGTTGCGACGT
ACATTCCAGATGGCACGTCTTGCTTCTCCAAGCATTATATTTTTTGATGAGGCTGATGCAATTGCCCCTAAAAGGTGCAC
ATTTATATCTTGTCTCTTGTTGTCCTGTGGCACATACTAGTGAGATCTATGATACATGATGCATGATATTGGTAAAAATG
ATTCTGTACAGTCATCATAAGAATGTGCATGAATTGTTATAGGCTATCTTCTATAATTACGTAATAATTATAGCCTAGTG
GTTATAATGACCTGAGTAGTACCCCAAGGTCCTGAGTTCAAATCTTCTATGGAGCGAATTTCAGATTGGGTTGTTTGCGG
GGCTAAGTTCCCTATTTCAATGGCCGTCCTATGGAGCGAATTTCAGATTGGGTTGTTTGCGGGGCTAAGTTCCCTATTTT
AATGGCCGTATATATCTGTTGGATGTAGAGGCCGGGTAAAAAATACCCTTCTCTAATAAAAAAATAATTACGTAATAATA
ATATTTGCATCTTTTCCATGGTGTACATGATTAGGAAGTTGAAGAGGTGTCAGAAGTGTTAAGCATATTTTGTTGGATAT
GGTTCCCCAAATGTTATTTTCATATAGTAGAATCAATTTATGAAAACTTTGCTTCTGCGCATGTTCCACATCTGACCAGT
GAATGTTAATATTGGAGTTTGTAATCGTTCAGAACTGGTCCCAGCGGGAACTCTAGTGGCAATGCCACGGTTGGAGAAAG
ACTCTTATCAACTCTATTGACGGAAATGGATGGTTTAGAACTGGCTACGGTACCTCTTACATATTTAGATTGACGATGGC
ATTCAAATGTGACTCTCCTTGTCATATCTCATATATGCCCTTTCTTTGTACTAAAAAAGTATCTTGCAATTTTTGATGTA
GGGAATTATTGTATTGGCTGCTACTAATCGCCCAAATGCAATTGATGCTGCTCTTCTGCGCCCAGGGCGTTTTGATATGG
TATCCCGATCTCCCTCTCCCTCTCCCTCACACATAGCAAACAATAATCATGTTCTTTTTTTTTCATTTTAACTGCAGGTT
TTGTATGTTCCACCACCAGATGCGGAAGGTCGATATGAAATACTACGCATCCATACACGCAAAATGCCATTAGGAGATGA
TGTGGATCTTTGGAAGGTAGCAGAGCGTACCGAGCTTTTCACGGGCGCAGATCTTGAAGGCCTTGAGGGAAAGTCTGAGG
TCAGAACGTTTTGTATGTGACGATATTCACTTCCAGGCCGCGCTAAGATCCTTGCGTCCATCACTTACACAATCAGTGGT
TGATGAGTACTCAAATGCAGCCATCCATGGTCCATTGACGAGGAGAAAACATTAAAAGATGTATTATTCTGGCGCACAAG
CATCAGTGTCGCCCATTGTTGATTCTGACTAGTTATCAGAACATTGTATCATCGGTCTGCTGTATATATTGACCAAAGTT
GTGACATGTTCCCATATGATTGCAGCGGCTTGTACTGTTTCCCCTGTGTTTTTCTTGGGTTTTGAGAGTATTGAGAGACA
GAGGTTAACACTAGAAGATAACTCTGCTTGTTAATAACTCCCAAGGACTAATAAAGATCTCATCTTCCCCAAGGAAGATA
AAGATCTCATCTTCCCCAAGGAAGATTGCAAGCTACTAATATGAAATGATATTCAGAAAATGCTGCTGATCAGGAAATCC
AAAGTGTCAATACATAGAGATCCTGCAAAAACGCACTGCTTCTGGTGCTTAGACTTACACTAAAAACAGAACATGCCTGT
TTATGTTTCACATATATCCCCAGCAAAACAATTTTTACAATGGGAAGAGAAGTTTCAGATATGTAACATCTTCTGCAGCA
TCTCCTATGCATCTTGCTCCTTGTAGACTAAGAATGCGCTGGTCTTGCAATAGCTGCGTGCCAGCGCCTTCCCGGAGGAA
GTAGGCGGTGAGAAAGCGCACTGTGAGATGCACAAAGTCTCGCCTTCAAGGAAGCTTTTTCTGCAGAAGACGAATGGAGA
GTGCCTTAGCAAGATAAGATAATATCAAACTCTTGGAAATGCTTGCAGAGCATAGAAGAGAACAACTGGACAGACAGATA
AATAATTCAGTGATATTTGCAGTGTGATGTCAGTTAACAAATAGTTTTATTAGTCCTATAATCTGGTCAAAAGCTTGGAA
TTTGTCCAAATTGACAATGCATGCTATGATGGATCTATACATTGTTGTTACAGAGAACAATGCATGCTATCCTTCTCTTA
GTGCAATGATGCGCAAGCCTTTTGCGTATTCCCCCCAAAAAGAACAATGTATGCTATCAAGAGTTCAAGACGGGCATTGC
AGGAATGCTGCGAAAAAGAAAGATGCTAAGTGAAGCAAAGTAGGTGAGAATGCGCATCAAACTTAGAACTTACCTAGCAG
CATCCATCAGTTGTGACCCTATTCGCTTTCTTCTGCGTGACGGTACAACCCAAATTGCTCGAAATCCACAATGTGCAGGA
ACATCTTCCTTTTCACATATTATAGCACCAGGATCTCGGTACTCTTCTTTGTTCTTGTCTGAATGATCATGCCGTTTCAG
GACTTCCCTCTTAAAACTGATTTTCCCGAACGCTAATGTATGGTTTGTTTTGACTGGTTCAATTTTATCAACAGGCAGAT
CACTGCCGTTTTCCTCTGTGGAGCCTGGAATCACTTTATGTGCTGTTTTGATTGGTTCCACAACAAGGCATCCCACTATC
CTCTGACTAGATATGAACAAATATACCTATGCAACGCAAATGAGGTTTTACCCATTAGGATGAATATATGTGCATAGATG
TTGTCATATTTGAACTAAGAGCTGATGTTACCTTACAAAG