miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0008222
Located between position 832931 and 832999 on chromosome 01 strand -
mature miRNAs for MI0008222:
         osa-miR531b (MIMAT0007763): CTCGCCGGGGCTGCGTGCCG

References
[1]Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"




>promoter (3kb upstream pre-miRNA, by PMRD):
AATACAAACCACACTTTATTAATTTGTTTAAAACTCCTTTTATTAATTCAATCAAAACAGCTTTAGCCAGATTTGAATTG
AATTAATAAAATTTTGTGATCAAATAAAAGTCAATCAGCTTTGGCCAGAATGACAATTATTTGTCACACTTAATTATAAT
ATTTATTTGTAACGGAAATAAACTCATAATGCATAAAACAATAATAACTTTAAGTAATAAATATAATGTAATGATCATAA
AATAAATAAATAAATGAAAGAGAATTTTATCACATAACAAAATCACTTATTATTCTTATTATCATTAACTAAAACATAAT
AAAATATCTTCAATGTTTAAACACAAATATCATAATCATAATCATAATTCTTCAAAAAAGAAAATTTTAATTGTAATATT
ATCTCAGCCCAATCCTTTTAATTAGGCCCATTAGTATGCAGCCCACATAACCTTTTTTTTTGAACTGGGCCACGTTCTCG
AGCCAGGCCGCACTCGGCCTGGCCCGTCATTGCCGCGCCGCCTTCCGCCTGGGCTCCAGGCCCAACAACCTGGGCCTAGG
CCGGCATTCGCCGCCTCCCGCGCGGCCTGGTTAGCCCGCGTCGGGACGAGCCGATCCGAGCCGTCCATCTCATCGGACGG
CCGGGATCGCTCCCGCGCGGGACAAAACCGGCGCGCGGCCGCCCCCCCCCCTGAAAACCCTAGCCCCATTCTCTCCTCCC
CTCTTTCTCTCACGCCCGCGGCGACGGTGAGCGAGACGATGACGACGGCGAAGCGGCGCACGACGGGGTGGAGGTGGCGC
CGCCGAGCCTTGCTCGCCGGGGCTGCGTGCCGCCATAGCTGGTGCGCATCCCCGTCGAGCGTTGCTCGACGGTGCCCTAA
GCACCCGCCGGTCGCTCGCGCGAGGAAGATCCGCGGCGGCGACGGCGAGACGGGGCGGCGACGGCTACCTCAGCGAGGCG
GCGTCGGCGAGACGAGCACGCGAAGAGGAAGAGCCGGGCCAGCACGACGGGTCGCGAGGCCGCTCGGGGACCAAGTCCTC
GGGCGCGCGCTCGCCTCTTTCCGGCGTCGGTGGCGACACGGTGGTCGCCGCCGGCCACCATGGCCCTTAAGTAAGCCCGC
CGTGCTCCTTTTTCCCCTTGATTTTAGGGTTAGGGTTTCATGATTTGGGGAAAAATTTGGGATCTTACTGTAGCTAGGGT
TTCGGTTCTTGGGGATTTGTCTGAGATTTGCATGAACTTTTGCTTTCCCCTTCTTCTAATTTCTTCAACCCGAAACCCTA
GAAGGCCTAATTCCATTTCTTATATTTCGGGATTGCATGATTTGGGCTTAACTCAACTTTAACAGAGGGATTTGGGCATG
AACACGAAGAACAATTTGAACATAAACACTTATTGAGTTCCAATTTGAGGCCAACCCGGTGCTCTGATACCATTGTTGGA
TTTGATAGAATCGGTTTGGCACAAAGTGGAACTACAAATTAAAATGGGATTGGATCATACCTTGATCTCCTGGAGTTCCC
ATTCTCTCTGTCTTTGTTCTTCTTTCTTCTCTTCTAGTTTGGAAGCACGAAGAGAATCGTGTCTTGATTCTTCCCTGTGT
TTCAGTGGGTTGTTTGATCGGGTAGCGAGAGAAATCTCTTAGGGTTTAACACTTAGGTATTGATCTCTATTTATAGCCAC
TGCACACAGGGGGAACCGACACTAGGGTATGGCGGTTATCCCCCGATCAGGGATGTTCATGAGAGATCGATCACTGTAGC
GATCACCCTAAACAAAATATCTCTTTGCCGACTTTAGGTTTAGCCGCAAGATCATATTTTGCGTTCACACTAACAGTGGA
TTCTTACCATTTCTTCTCTGAGCTAACTGAAATCTCGGAGGAGGATGAGCACTAAAGCTTGTGTCTGCTTGGAAGCCAAG
TCAGCTAGCTAGCTAGCTTGTAAGTAGGCTGTAAAATGCTGAAGCTAGAAACGATTGTAAACAGTGAAATGAATTTTCTG
CCGGGCCGGCAACAGTGAAATGAATTTCGTACGCTATTTATTTATTTACAAACAATAGAAGTTGATGCGAAAAACACACA
CTGGCCTGGAAGATCTGCTTAACTTCAGTGCAGGTCCAAAATCTTGCCTTTAGGTTCGTGAGCGTGCCAGTTGATTTGAT
CCTGCAATCAACAAGAAATAAAGACAAAAAAATAGCGGTTAAATCCATAAATGATAGCCAATCGGCCAGTCGCCGATGAC
ATATCATTTATCTTTGAGCCGATGACATATTTGAATCGATCGGCAGTCATAAATAGGAAAGAAAGAACTAAATCTATTCG
ATCGGCTGTAAATATTAATGGTATATAATGCTTCTGTCGATATATACTTAAATCAAGTGATTAGGATATATCGGTCGCCA
TGCCGAGATAGTATAAATCACTTAGATCAAAATATATATTAACAAGGAGATTATAAGCATTCATAGCATAGCCGATCAGA
TAGATCTAGCATGTATCGGCTAAAACTCCGATACCATTCTATATTAAGATATTAAAGCAAGCAAAATATATCAAACAGGA
AGTTTAATATACCTAAATGCAACAAGATCTTAATATAAAGGGCGGATTTAACATATCAATCAAGCATATAAAATATAAAG
GAGTTAAATCAGGTAAGATCGGCTGAAACCCCGATACTACCCTAATCGGCAACCAAAAGCAGGCTAGAGATTGAGATTCT
AATCACGACTTATAAGGTCAAACTTAACTGATGCAGTTATAAGTATGGAAAGAATAACAGTATCTAGACAATCAAGCCGT
TGGATATTTCATAGGATGGTGGATACCCTATATAATCTAAGTCGATATTAGTATTTAACCTTGTCGGTGATATGGGACCG
GGAGTATTGCGCCCGGAGGCTTGAGGCAGATGGAATCGCCCACGTGGCCTGGCACCTTCGGGGACGTCGGGCCCGAGGGT
GAGGTGTCCGCCCTCCTCCTGATTTCCCCGAGGGGGGGGG