miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0008271
Located between position 13234213 and 13234391 on chromosome 04 strand +
mature miRNAs for MI0008271:
         osa-miR812f (MIMAT0007821): ACGGATGATTAAAGTTGGACACGG

References
[1]Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"




>promoter (3kb upstream pre-miRNA, by PMRD):
ATGGCGAATGAGTGACATTCAATGTTGGTTTGGTATGAAAAGTTACTTTAAAAAAGTATTTCAGGAAAATTATATATAGA
AAATGTTTGCGCGAAATGCACTGTTTGAATTAGATTGTTGTGAAGATTATTGTCACATGCTATTTACTTGATTATAGGGA
TGGCTTAAATATGTTATAAAATAAATTGAATAAATAACTTAAAATAAGTTGTCTAACAATGCAATTGAAAAATGTTTTCT
TTCAAAGGCATATTTTGCGAAGCATGGAGCAATTAATCCATTACAACAATTCGATGAATATGGTGAAAAGAACAAGGAAG
TATGGTCGATGCTTGACTACAGGGTGCTCTGATCTTTTGCTTACCTACGTATTTGTTACAATGCTCTAAGCCTTTGCCTC
CTCTTGACCGTTAGTCCACAAGTGAAATTGAGGAAGAGATTGACCGCTAAAAGCAAATTTGTAAAAACTTATCCAGTAAC
AGGGGACAGAGATTAAGATATTGAAGCCTAAAGTACTCTGCTGCCATTCCTCGATCCTTTGCCAGAGGTATCATCTCGCC
TGTCATACCATGTGGCAATTGGAAGTTGGGACATAACCCATATGCGACCTGATATGCTTGAATTTGTGACCTTGTTGATC
GAGGAGCAGAAAGGAAGGCTTTTTAGTTGGCCGAAGGAGCAAAACTTGGCTGCCTAGCTCTCATCGAACTAGAAGGGCCA
GGTTGTATTTGTGCCTCTCCCGGCACTCCCTTGATTTTTCTATCATGGTACATGCAACAGGTAGATTGTAATGGAGCTCC
TGATGCCTCTTAGACCTAATATGCATGTAAGTTTTTTGAGGAGCAAATTGTTGTCATCTGCTTGGCATGTTATTCCTTGC
CTTCTGCTATGTCTGAGCTGCTCTCGTTCTTGTTCCTGTGTTTTCTTCTCTCTTTCTTTCTCTTATGGTCATTTATATGG
ACTCTTCGAGACTTGTAGTGTTGTGAATGGCAGTACAAAATGTGGGACCGTAGAGCTATTTAAAAGAAAATGAGCCACAA
TTGATGAACATTTGGTTTATTTTAAAAACAGTAAATGCAAATGGACAGAACATGGAGATTACTATGAAAGCAGGCGATTT
GGTATGAAATGAAATCTTTACTGTGATGTGGGGTTTGTCAAATTTAATTGCCTTTTACCTCTCTGTTTAATTTTCTGATC
TATTCCATTTTTGAGATGGCCTCAAATTTACTCACTTGATATAGTAGCACCGCATAGAAAGCAGTTATTAGGTTCAATGG
CTTTGTATCAAAAACTATGTAAAACATATTTCCACGACGGTCTATGTTTATTGTCATATTAACTGTAGTCTCTTTCCTGC
CAGCAAACACAGTTCTACTAATTACACTGAAAAATTTATTGAAGCCTTAAACTTAGCAGTGGCAAGAAAAACTCCTTAAG
CTCAGCAATCCAACTAAGCTCGAGACGGCAGCTGCATCCACTCTAGGGATGAAAACAAAATGGATTCGGATAGATAATGT
TCATACCAGTATAGAAAGTAGATATCCAATCGGGCTATGATCATGTGAGAGAGACCGCCAAGCCAGGCCACGAAGGGCAG
CCGGTACCAAGGGGAACCACCGGCTACATCTACGATTTCTATATGAGTCACCATTAGCTTAGATTATGTGCAACCATGTT
ATCAGTTTTTCCTTAGAAGTTGACCCATAATATCAACTGCAGTATTAGATCTTAATTAGCAGAAGAAACGATAGGATTGG
TGGCCTTGATGGCCCATCCTTTTTCTCTTTCAATGTCACCATATATGTCATTAATACCATTAGTTGTTCTTTTAAATCTT
TTTTATATCCTTAGACATTCTCCTTATTATTTTTTTAATGTTCTGTTATATATTGCTCGCTATATTTTCATGCAGTTTCT
TTCATCAAAGAGCAAATCACGCTTTCTTAGTATGGGTTGAATTAATCATATAATACAAAGACTTATTTTCATGCTATCAG
TTGTACTGGTTACTAGGTCCAATTATAGATATGTTCTTTTTAGTTCTTTAAAAATGCATCTTAACCGCTGACAAACACTG
GTAAGAGAGATTGTAGCTTGAAACGATATTTTTAGGTATTTCTCCAATGCCCACCTTAACACGTGGGGTATCATCTTGTA
TAGGAAATACACAATGGCAATCAGACCTGCTGTGCTGCCTCTGAGATTACCTGCTCGATGCTCGTTAAGCATAGCATGAC
CCAGCAGATAGATTCGTGGCTTCCGATGCCTCCCATACATACTTACATAGCACATAGCAGTAGAAGACTAACATCGATTT
CTGCATTAACAAAAAGGACCGCATGTAGCTCACTACTTAAAAAAAGCATTTTTTTCCGACGTGGGGTCTTTTTTTCGCAG
GCGGACATGACCCTTGGAGCCAAATGACCGCCTACAAAAATATAAATCGGGTGAAGTTCGTTATCCACCTACGAAAATCT
ATTTTCGCAGACGGACCACTTAAGCGGCGTCTAAAAAATGTTTTTTTGCAGGCGGACCACTTAAACGGCGCCTGCTTGGC
GAACCTTATGTGGTCCGCCTGCAAAAATCCTACCTACCCAAATAAAATCAGTCATCCTTATCTTCTCCTCCTTCATCCTT
ATCCTCTCCTCTCCACCACCATCCCCTCCTCTCTCTCTCTTCCCTTCCCATCATATCCTCTGCTCCCTCCCCTCCCCTTC
CTTCCTTCCTCCGTGAGAGAGAGAGAGCTTCGGCGGCGGCGCGGGCAAAGGGGGCCGCCGGCGGCGCGAACGGAGGGCGG
CGGCAGAGGCACGAGTGGAGGGGGCCGGCGGTGGCGTGGGCGAAGGGATTCGGCGGCGGCGGCGCGGGGCGGAGGGCGTC
GGCGATGATGACTACCGCACAACGACGATGACTACCGAGCGACGATGACTACTACCGCCGGCCACGTCGCTGCCCCTCCC
CGCGACCCCTCCTCTCATAGATCCGGCGGAGGGGATGGGT