miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0008297
Located between position 1163919 and 1164105 on chromosome 03 strand -
mature miRNAs for MI0008297:
         osa-miR812h (MIMAT0007848): AAGACGGATGATTAAAGTTGGACA

References
[1]Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"




>promoter (3kb upstream pre-miRNA, by PMRD):
CTAATAACCGGCACCTACAACCTTTATAGGTGCCGATTTTGGAACTGGCACCTATACGGTTGAGAATAGGTGCCCCCAAT
TGGTTCTGGATAGGAATCTGACACCTATAGCCAATTCGCATCAATAGGGCGTCCTGAGTGATTTTACAATATTTTCATAC
AGATCATCAATTCGATTCTCGTTGGGATCGAACAATTAATTTCTTATGTTCAAAAAATGTCCAGACGCACTGTCAAACGC
TGGGAGTCTAGGACCAATGGCACGAGCTACGTGGACTTGGTGGTGACAACATGCCGAGCTGCCAAGCACCGTGCGTGAGG
CTATGTCACTAGCGTCGTCAAGCTGCCAGGGACACCCATTTTGCAAATAAATGAACATGTACGAACACCTCTTTCGCCCT
TGGGATGGGAAGTAGTGCACAAGCTAGCACCACTACAAAATACCTAATAGGTACCGGTTCATAGATGTCGGTTTATTTAA
AAGTACGGGTGACATGGCACGAGAACAGCTGTGGAATGACAGGGTGCAGGAGCTAGCCAGCAGTCGGTCACATGAGGGCG
GGTCCTACTAACATACACCAGAGCAGCTCATGCATGCGCTACTTGATCAGCCACGGAGCATCCAACCGCGCTTCATGTAC
ACGACTGGTCGCGCGGGAGACGTATCACGAGCGAAACCCACATTTTTAAGCACGGATAAAACAACAATAATGAATGAGCT
AAACCAATGATTTCTCCTTGCATGAATCCCATGATGGTGTCTCACTTCTCATCCAGCAATCAAAGGATCAGGAGATATAT
ATAGTCATCGATCTCTATCTACAATAACTCGCTGTTCAACAATCTGCAGCCATCATTCATGCGTGCATGCAATGCAAGTA
CTGAGGAGCGACCACTACTCGATCAGTACTCACTATTGCGTTCAAGGGATGGATGCACTCATGGACACGATGGCTTGGTA
AGCATGAACAGTAGCGTATGGTACCACAACAGTTAAAGCCTGGCTAGTATTAGTACGGGCCAACTACTAGTCAACTACTG
GAACTAACCGGGATAGAGGAGAGTAATATGCAAGAGGAGAGTACTTACTTCCTCCGTCTCAGTTTAACTGCAACCATACG
TTTTCGTATTCAATTTTAATCGTTCGTCTTATTTGAAAATTTTTTATAATTAATATTTTTGTTGTCATGAGATGATAAAA
CATGAATGATACTTTATGCATGATTTATTTTTTTTATTTATTTTAAAATAATTTTTAAATAAGACGGACGATTAAAGTTG
AATACGGAGAAGATCGCAGAATTTTGTATTGAGATTGAGAGTAACCCAAAATGCAGAGAATACTCTTGCTTGCATTGGGA
GCTGAGCTCGAGAAAGATTAGCTCTCACTGAATTGTGGTCCTAGTCTCTGCGTAGCATTTGCAGTTGGCGTGAGACGATG
ACAAAGATGCCATTTCGTCTCCGCCCATTGGCCTGCAGCTGCAGCGCGCCCAGTTTTGTCTCCAGCACGGACCTCGTGTA
CTCATCTCTCCTTTCTTGCTTTCACTGAAGTGTGGGCCCGATGTGTTCTTGGACCCACCTAGCAGCGACTCAGTGGTTCT
CTGCTAGTATTATCATTCCACCCAAGAAAACTTAATGGCGTCACCGGTGAGCAGGGGATGGAGAGACTGTCACTCCTGCC
GCTGCCAACACATGCCTGCCGAATGGGACCCATATCGGACGTCCTTAGAACATCGCTGCGGCCCGCGGGGCCATCGTATT
TACATTTCCGTCGTCCTTATTGTATTGTCTATTTATTTTAGCGATATTTCGTTGTGATTCGGATAAAATGTTACGTCCAT
ATATAATAGTACGTTTTTTTTACATAACTTTCTGGTAATATGACATGTGAATAAATTTCATGCTACGTGTGCTTTTGGCA
ACCATTCGTAGTGAGAATTGATGAACTCATTATCATAGGAGATCTTATAGTTCGTAGAGCTAGCTAACGATCACGTGACG
ATGGAAACGCGGCTAAGGAATATCACAAGTTCCTAGTCTGCTAATGGTGGCTGGAATCAAATGCAAAGGTTTACTTTTCT
TTTGTTACGAAAACTTACTCTTACTCATGCATTAAGCATTAAGGTGAGATACGCCTGCTACTGCATCGTTAGAGCCAAGA
GGATGTTTGGTTTCATTTATAAAGTCCCGTGTTCAATTATTAACATGCTCACACCTCCTTTATTATTAGAATGTCATCCT
CGGTTGTCCAATATTGTTTTTTTTTCTAAAAAAATGCATGCATGTAACCACAACTTCTCTGGTTAGAAAACTAATAATTT
TAGAGCACAAACTATATATAATATGTTTTTATATATTCGTCGTTTGTTTTTTATTTTTTGAGAAATCGGTGTTCAAAACG
ATTTATATGAAAGAGAAGAGGTTTTTACGTAGAAGGGAGAGGGAGAGTGATGAAAAGAGAATGACTCTCTCTTTAAGCAG
TGGGGACAATTTGATGCATATATCAACTTATGTACGTAGTTACCCAAAAAAAAAAGAAAATCTTATCTAGGTATTTGAGG
ATATGCATAGTTTTCTCTCGAAGAATCTACTTGTAGACTATGCCTTCCGATTAAATAAATATAAGTTGCTTAAGCTCCTA
AAACTCTTTCATAAATGTAGTTTGTTTTCAACTCCTATACACATTTTTTTAATACTTTCTCCTCCATTTGCCCTTGCAAA
TGAAAATAAGAAAATCTGGCCTATTCCTTCACAAATATAAATGATCCAGCTTGTCATATGTACGTACTCCATAAATGAAG
GGATAGCATGCATGATCATTTGCACAAGTGTATAAAATGTTTTATATTTAAATTCAGAAGGACATTCGGACCTAATTAGA
AAAAAAGTAGAATCAGAGAAAGTATGCGATATGTGTGATACGTATGGAACCCTCCTATGAGTCACCAGGGTCATGCAAAT
TAAGCAACATCTTTCCAGCTGTGTTTCTTGACTGAAACTT