| Basic information from miRBase |
| hairpin accession number: MI0002192 |
| Located between position 4332062 and 4332160 on chromosome scaffold_12 strand - |
| mature miRNAs for MI0002192: |
| ptc-miR156i (MIMAT0001898): TTGACAGAAGATAGAGAGCAC |
| References |
| [1]Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" |
| [2]Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants" |
| [3]Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" |
>promoter (3kb upstream pre-miRNA, by PMRD):
TGCCACGTGCCCTAATAAGTTGTCATTGGACCACACTGTGGTCCAAAGTCTGATTTTGTTTTTTGCTTCCCCCCATCCTG
ACTGGGAAGTGGCTTAATTTGTATAAACCAAGTGTAACTGCAATACCAATCTGAATTTAGCTTAATAAAGATTCACTCTC
CAACAAAAGGTGATAAAGATGATTTGTTCTTAGATTTTACCTTTAACATACTAAAAAAAACAAACAAAAAAGGATAAAAA
AGACAAAAACTACATTACTGCTACTATTGTGAGTTAAGTGAATTTGGAGTTAAGCACcctaatgttgttccactgagtgt
aagtgagaaagataaactatatcgtcgattctctaacagtttgaataaattttctcgtaggtgtagtcaatacagttccc
acaactaataccttcttctttattagagtgaatatacgttatggatctactatgagagtaaaaacaaggtctactgatgt
ttagggattaggtaaatttgtcctaaaactctaccaaactcgatcaacgttcatttgaagatgttttcaagaagctatct
ttatttgtacccactacctaaatgttggtcataccgttcacgttagaaaacatcaaccctatgtgaagaacagtccatag
atccggaaagaaaccttcggttggggttttCAATATCAACCTAAAAACCAGTGATTTCTTGAATCTGTGCAAGGCTAGGA
TTGTAGAGAGGAAGGTTATTAAGCATGGTTGGTCGTGTATGTTTGATTAAAACTATATTGAACTCACCATCCATTTATTA
TATATAGCTGAGCTGAAAGCGATAGTCAAAGCTATCGAATTATCAGCTTCTAATTGCTTTCTATATCATAAACATATTAT
TATTGAATCTGATTCTGCCAATGTCTTTAGCTGGATGAATAATCCTCGTAATAGACCTTGGATTCATCATAAACTCTTCT
CTTCAACTTAGAGGCTAGCTTCATGTTTTGATTCAATCACCTATACTCATTCTTACCGGGAAAGTAATTACATGGCAGAT
CACCTCGCTAAACAAGGAGTGCATAGAATATCTGATTTTGTTGCTTGGTTATGACCCCCTAGATAATATGTCGGTACTAT
GTTTAGCCTCTGCAGCTTGTGGTATTTTGGGGCAATGTTTTGGTTACTATGCAGGGAACAGATAGTGGAAGATCTTAACT
GATCTAAAGATTATGTTTCTATATTTAGCTAGTTAGTTCAGCGAGTTTCTATTCTGTGTAATGTGATTGCATAACACAAT
TATGTCTTATTTAATCTTATCAGCTTCTTTCAAAAAtatatagatagaaagaatacggttcccatatcaaatttactatt
gaaggtaggttccttataaagatacccaacctcagtaattacgtttcttttaaatattccataatatctcacatcaacac
tctcttttttcttatcctctgaatctacaccctaaaaattccacttttgtttcgaaacaataaatttaccaatatctctg
atGAAGATGAGAATAAAAGAGGATGGAAAGGCTTTATAAATAAGAAGTATCAACATGTGTATACAAGTGGGCTCCTACTT
TCCATCCACTATTATCAAATATTTGGAATGATATATACTCCATCATTAATTATGATAATCTAATTTCAACAACTTTGACA
AATAGTTGTCACTATAAAGTGAAAAATGGAAAAGATATTTATTTTTGAACAGATTATTGGTCAATAAATAGTATTCTAAG
ATTATTATTTTCTCAACTGTATTCTCTCACAACTATGTCAATATAAAAGATAAAAGATAAAAGATAAGGGTGAATTTACA
AATTGCTTGTATTGTGGGAAAATAATTCAAATTAATTTTTTTGTTATTATTATTGCTACAAATGTTATTAGTAATATAGT
GGATTATTTTTTCCCACTCCTTAGGAAAGCTACATATGAAAGAAGCAGGTTGAATATTACACATCATATAACCATTGTTA
TTACTCGTGTCTTGGGGTGGACTTCTCTTTAAAGTGATGGCTCTAGATATTTTGACATTTTGCCCTACAAAGACTAATTT
GCCCACATCTACTTTAGTTATCTGCGTTCAAGCCACTTGATAAGTTCAAAGACATACACATCTCCAGTTCCATTGTAGTG
GGTCACACTATATTGACATGATGAGTAAATAAGATATGAATCATAACAACTTGCCTAAATGATCTAAGCTTTTACAGCCA
TTCCATGCGGATTTTGACCTGTAAATAATCTTCTAAGATTTGCTGAAAATCCCAGCGCACATGGTATCTCAAAATAAAGC
TGAGTGGATGTGAAATTAGTTAGGTAGATAGATATCGCAGTACAATGATATTCTGAATCATTCAACCCATGTACTTGTTA
ACTACACTATTTGTTATGCATTAATTCTGATTTTATTTATATTTTTCTTGCAATTATGGGATGGTAATGATCAACTTTTT
GTTCTTAAGATGGTAATGGACAAAAAGACTCGAATCCAAGTGTTGATTCTGAACTCATCTTGTACATGTATATATAGCTA
GGTAGGTCTAAAATGAAGTGCCATTAGGGTTTTCTTCCTCTTATAATTATAACATAAGTACGATTAGGGTTATTAGGAGA
TGAGCATGGCTTGTCGTATCAAATATTGAGCTCGTGAGAGACGGTTTCTTGAATAGAGTACGAGAGACAGGCAGTCTATC
TACCCTTGTAATTCTTTCAGTGGGCATGGTCCCTTTTCTTCCTATAAATTGAGGCTACTGGTGGTCTACGATAGGTCATC
CCCAAAGCTCTCTCTCTCTCTCTCTCACTCCCTCTAGACCATTATACACCTTTCCTTTTAAAGAAACTTTCTTTATGAAT
ATTATAATCTCTTCTTATCAAGTCTATTTTCATCTACTCGGGGGTAAAATCAAATTATAAATATATAAAAAAAGAGTTCA
GAATCCAATAGAATTGGGAGTTGTGTGGAGAGGAGGCACT