| Basic information from miRBase |
| hairpin accession number: MI0002259 |
| Located between position 31302443 and 31302565 on chromosome scaffold_1 strand - |
| mature miRNAs for MI0002259: |
| ptc-miR169i (MIMAT0001965): TAGCCAAGGATGACTTGCCTG |
| References |
| [1]Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants" |
| [2]Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" |
>promoter (3kb upstream pre-miRNA, by PMRD):
CTTCAGGGCCCGTGGGATTAGTCGAGGTGCGCGTAAGCTGGCTCGGATACCCACATTAAACTAAAAAAAAAAAATTATCA
CTTGATGTGAACTTTTTCTATGTATTTTTTGGATTTTAAGAGTTGTCCCTTGATGTGAACTTTTCATATACTTTTTTTTT
TTTTTACATAATTTCTTCTATGCAGATCATGTATTTATTTTCTAGACTAATAGCAGATCATCACCAATGTTTTTTTACCA
ATAACATGCACTAAAAAAATAATCATAACATAACATATCAACCAAGAACCATTATTTTTAGCTAAACCATTACAACACCA
ATTTTTTTTCATTAAGGATATAGTCTCTTTTCCATGAAAAAAAATTTCAAGATCAAGATATATAAATACATCTAGTCACC
AGTCATGAAAGCCAAAACAGAACCAAAGAACAATTTTTAAAAAGAAAAGCTAGCTAAAGGCCATGGAAGCCAGCCAAAAG
TCATAATAGCTAGGTCCAAATCATTGAAAGTCAAGCCAGCTCAGACTAGTCCATACAATTTCTAAGATAGATATACACTC
CCTGACCGTTATTTTAATTTTTCTCTTTCTATATATTTTTCTTATATATGTACTTACTTAATTTAAGTATCAAAAAGTTC
TTTGTTTTTTAAGTGATTTATTTTGTTAGGTTTAATGCTTTACTTATCATTTCATATTTCCTCCATTATTTTTTTTTTGA
ACTTTGGAATAAACTAATATCTAAGAAAAATAGTTTTTTTTTTTTAATTTAATTAAAGGGATATGTGATGCAATCCAATC
CACAATCCAATCCACACCAAAGAATCAATTAGTAGTTCTTGCAGACCTAATCACAAGCGCTAGGGCAAAGAAGTTCAAGG
AAGTCTTTAATTAACTTTTACAAGACACATGACCAAGGTGAACTATAAAAGAGCAACAATTACAAGAACAAGAAGCCTTA
ATAAATTTGATTCGTATCCAAGACGGGCTCAAGAACCATGGGTTTCGCCCAAGGGAGTAATTTCAGCATTATTGAGCTTG
TTTCGTCAAGTATATATTTTGTGTTTTCTAATCCAACAAGAAAATCATGAATTACTTGGAAAAAAAATCTAATCTATCAA
AAAGATTTAATTGGAAGGAAAGTCCTACTCTACCATAGACACCAAAGGCAGCGGCAAACTACAATTATTGGGACAAGAAA
ATCTCCTAATCTATTTCTCAAAGAGAAGTGGCGGCATGGAAGGATTTTACATCCAAACAATTATTTCTCTTGCATTGTTT
TTAGGTATTAGTTGCAGCACCATAGGATAAAATTTTTAGAATATTTATTTAATTATTTTTAAGTTAATTAGTTAGTTTTT
GGGTTATTTTGGATATAGTTTCAAATTCAGTTAAGTAAGCCCATTAATTAAGTTATCTTAGAAGTTTATTTCTAATAGTA
TAAATACTTTTTTATAAGATTTAATTTTCATATTGTAATACACATTAATTGTTGCATATTGAAGCATAGAGAATAAATAT
TTTTTTGTTTGGTTTTTGATTGAACTACACTCTTCAAAGAATTGAATAATCTTTGTTGTGATTTTATACATTTTATGCTC
GTCTTCAGGTGAAGATATTGTGTGAGGGTGGTTATTATAGTCTTGATTTTTTAAGACAGGTCGTCTATTATGTCAAGCTC
AATTATCAATCTCAAATCTCAATTAGGTTCGCGAATTCAATTAAAAATCCCGCTAGGGTTCGCTTCAATATGTATTTTAA
AATTACTAGAAAAGATGATTTTATATATATTGATAAATTTATGCAAGTTGATACAAAGATCTTACAAAGAAAATATCTTC
ATGACTTTTTCCATACATATGTTCGTGTAAATCAGTACTGACTTGAAAAGGTTAGCATTTTGCATGAAATATTGAGTTTT
ATTCTTCTGCGTATAACTTCTCAGCTTTAAACGAGGGAAAGAGGGTAATTCAATGTGTAAGCACTGACGCGGCCTCAATC
TCAAAGTCAATCGGAACAATAGAACCTTTATACGGTGGCAACGCCATTGACCTGAATTTTTCGGTGGGGGCATCTGCCTA
TCACTAGTGGCTCGGTATTGCCTTGGGAATCATGTGCTTTCAACATTAAAGAATATAAAAAGGCCAAGAGAGAAGCCATG
CAATATTCAGGTTATCTTTTTCTCAAGATTTTGTGATTCCTTCCAATCATAATGATTTAAGGCATGTATGAAGGTCATTG
AAATTACTAGGAAACGAAGAATAAATCACGTCAGAGGCCCATTTGCCTTCAAATCATGCTACTGCTTTTTTAGCAGCGGT
CCAGAATTCGAAACCACAAAAAGAGCATGAAAGCAAGTAATTAAGCGGACGAACGCTCATTAACTTCAAAATTTATGCTA
ATTTTGTGTTAATCAAGTACATTTTCATGCAAATCATATTGTGATTAACTACTGTTAATATCATCAAATTAATGATGCCA
AATTTATTGAACGGACACTGCACACATCCCAATATCAATGGGAATTAATCAAGACAAGTTGATGAGGCATATCTTGACTG
TCGCAGGGACTAGCTAGGGGGACAAGTATCCAGTGAATGATCTGAAGGTCAAATGCAAGTTGCTTCTTGCCTGACTAACG
TGCTAGATGATCGAAACCTTCGAGGGTTTTCTTTCCTTGCAAAAATTCTATCTCCATCGTTGTATCAGTGACATGTAGCA
AATAATCATGCAAGGAGAATATATTCCATTATGGATAGGTTAAATTATGCACTTGATAGGTGGAAGAAAGATACAGAAAG
TAAATTTATAATGGATGAGGCGCATAAATAATTGACCGGAAATGATTTTTCCATTCACGATACGAATATGGTCTTGATTC
TTTTATATGGGCTATAAAAGGAAACTGAGAACATTTGTTTTGAGCATACAATTAATGGAGTATAGCTAGAGGTGCGTAGC
TGATATTAGAGGAAGAGAGGCCTAGCATGAAGGTAAAGAG