| Basic information from miRBase |
| hairpin accession number: MI0002268 |
| Located between position 12082579 and 12082697 on chromosome scaffold_15 strand + |
| mature miRNAs for MI0002268: |
| ptc-miR169r (MIMAT0001974): TAGCCAAGGATGACTTGCCTA |
| References |
| [1]Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" |
>promoter (3kb upstream pre-miRNA, by PMRD):
TAGAAAGCTAGCTCACTTTCATTTTGTCTGGAATAGGAAGGATGACATGAGACTGCCATTGTTGGAAACGAGAAGGTAAG
CAAATCAATGCCTTGGGGATGATTCTAGTTGGAGCCAAAATATGTGCAATTTGATTTAAACTCAATTATTAAGGTACAAT
TCCAGTCAAGGTTGCCATTGCATGCATTGAAAGCCATGTTAACCAAGTTAAAGCATCAACAACTTACTTTATACTAGATT
TCAGGAAACTTTTCTCTCATTATCAAGAATCATTTCAACAACACTATAAACATCATTTAACTACAAGTATTCAATCTTGT
ATATAAATTAAATTCAGGTTAAGGTTTTGCACTCAATGGATCCACGGAGCACTCCTTGCCTGACCATATAAAAAACGATA
CACGAAGCCATCTTCTAAGGAATTCATCTAGCTCGCTAGCACCATCCTTGCGATCCTTTCAACCCAACTCTCCATGAGTT
AGGCTCTGGACTTTCACGCCTATGCTTTGTAAATCATCTTGCCTGAAAATCTCAACTTGGTGCATGGCTACCACTTGGCA
TTAGATACCTGAGAATCTCTTCAAGGAAAAACTTTTTGTCCTCGGTCAAGGCACACTTTGCCTAGACCTAGTCCCAGTCA
CACCTTTTTCATACATTATAGAGTAATCTATTGAGATTAGGGTAATTATCTTGCATTATTAGCCCTAAAGTAGATCAGGG
ATCTTCTTACCTCATTTCCATGTAGGAAGAGGAAGAGGAAGAGGAAGAGAAACTAGTATATTAAACCCTGCAACAATCAT
TAGAAAAGGGAGATAGCAATGGAACATTAATAACATCGTATAACCATATAACAATAGAAATAAAAGAAAATATAACATGA
TCGCCATCATCACAATGGAGAAGGAAGATCCGTGTCAGTATAAACATTTTTCCCTCATTAACAATTGTTAATTTAAGCAT
CGAACAGGGAGACTTGTTTGCAGGTACCCTTGGAAAGTCAACCTCGCCAACAATCATCACCAACTCGTCCAGCTTTCTTG
CTTTTACTCAGTAAAGGGCACATGTTCCTAAAAGATTGTTACATATCTCTTCGAGGATCTCACTTTTTTGGACCAAAGCC
CAACAGGAGCCCATCAATCTCATTAAGGCCTGAAAAAGAAGCCTCGTCAAGCATTAACAGGGGGGGAAAAGGCGAGAGGG
GAGAGGCTATCCTCTCATGGTATTGTTATTTCGATTTTCGAGCGTGTTGTCACAGATGAACAAAGAAGGGACAGTAGCAC
TACAGACGACCTGGTTCACGGTAGATCATTCACATGACTAAAACCCATCTTACCTTAATCGTCTTTTGCGTGACGACTTC
GAGCTTGTTTGATAATTTAAAACATAACTTTGCTTAAAGAGGAATAAGAATTTTCTTTACCAAAATTCGGGGAACTTACG
TTTTCAGTGTAACATAACCATCCCAATTTCTACTTCCAGAATAAAATCAGCCATCATAAATAATTAGAGATGCCAGGCCG
ATAATTTGGTAAGCACAACCATCTTTACATTAAATGAATGCATATGTTTCTTGTCCTAATTAAGCTATATGGTGAATGAA
CAAACATCTAGCTAGCGACCAAAATAATTTTATGCTAATTGGAAATGCAAAGTTTTGCTTCCCTGCACTGTTTGGGTGTT
AAAAAATCTAGGTTTACATGGTCATTAATTACATGCAAGCTAACCCAAATACCCATGTCAATGAAAAAAAAAAAACTTCA
CTGCTAATTTGATATTTACCAGAAGAGAAATCTTCACTGCTTGGGACCTGGCCATTCCAGGTCATTGTGTTCCTGCATAT
AAATTCTTTTGAAGCATGAATCGCTAGAGGTTTATTAGATTGAGTTGTAAGAAAATAAATCATCCCAGGGAGCTGCAGCG
GTGTGGTTGATACAAGTTCTTGAAGGTAAATTTTAGCACCACCTTCTTTTTTATTTTCCCCTTGTTACTGAGCAAGGCTT
GGGGTATTTTTATGTAAGAGAAACATAGCTAGAAGAAGAAAATACATTCAGTATTCAAGCTGCCCTTAGTATTTCTGAAT
GTACTCTCTTTGTGCAGTATACATGAATTTTCTTATCCATGCTGCATTCGATAAAGATGCTGCTGCTCTTAAATCCCCAT
AGGCTTATGACATATTCCTCTTTTCCTACTCTGATTGATCGAGAGCCTCCCTACGGTTTCAGAGCTTGCTATTATACCCT
TCCATTATTTCTTCATTGCAGTTCTGCAGTTCTTCATTTGCTATTTCTAGACTTTAAGTTTTCTTGGATCAACTTACCAT
TAAACCTCGCCTGGACCATGCCTTTGAGCTTATGGTTAGCCTTCTCTGTTTCCTCTTTCTCAACTTCTCTCTTTGCACAA
ATCTTTCTAACATCAGGGTACCTCATCTCATCTTCTTCATTCTTCGTCTGAAGTTTCTTGTTTTGCTCTCTCAAGCCTTC
ATTGCATGGATCATACTGGATTTCTCCTTAGCTTGCCGACTTTCAATGCCCAAAGACTTGTTTTTGGTATTTATTCTTGG
AGAAAGAAATTGCAATGATTGATCAACATGCTACAACAAGGCAGAGCCACTTTTGCAGCTCGGAAGTCAATTTTCTTCCC
ATATGCAGAGAGCTATGAAAGCAACACCTAGGTAGCATAATGAACATTAATGGATAATTGTTTGGTTCCTTGTCACAGCT
GGAATATATTCTATCTCCCTTCTTTGGTAACATTTGAAATTAATGTTATGTTCAATGAGACAACAAAATAGTAAAAAGGC
TTTATATATTGAGGGAAAAGTAGTGCCCATGGTGGGAAATGAAGCTAAACTTTTTGCTTGGAAATTAAAGTATGGTTATC
TCACTCCTCATAATTAGCTATATAAATAAAGACTCTCTGATGGAGCATTATATCACCCCATCTTCTTGATTACTAGTATC
TATAAGAGGAAGAGAGTTCTTGTATGAAGATGAAGAGTTA