| Basic information from miRBase |
| hairpin accession number: MI0002280 |
| Located between position 13263742 and 13263841 on chromosome scaffold_18 strand - |
| mature miRNAs for MI0002280: |
| ptc-miR171d (MIMAT0001986): AGATTGAGCCGCGCCAATATC |
| References |
| [1]Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" |
| [2]Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" |
>promoter (3kb upstream pre-miRNA, by PMRD):
AAAGGACCTTACTAGAAAATAGTTGGGGGGGGGGTCAAAAGATAAAAAGAAGAAGAAGAAGAAGGCAAACAGTGTAAATC
CACGATGAATGAGATGGTAAAAAATCCCAGCCGAATTAGTTTATTTCTTGTAATATTGTAATGTTGCTTTTCCTCGTGAA
CAAAAAGGCCAACATGGCCCATTAAAAAGCTTGTAGAAAATCTCAAGTACGAATAGAACATGGGTGTCTCTTTGCCCAAT
CCCTTTAATCAAGAATCATCAATTTGACTTTGGAACACATGCTTTCACTTTTCATTTGTTGCTCGAACTGTGCATCAAGG
GAGTTTTTCCATTGAAAAACTTCATTTTCTCAAGTGTCTTTAAACTCAATCCAAGAACATCCATCCCTATTGAATGTCAA
CTATTGAGAATCAGGTCATGATCCCGGCCGACATGTTTCTAATCCTTTACAACATGCACCAAACAAGCCTTCATCGGCCT
CTTCATGTGTTGTTGTTACATGTAATATGCTGTTTTATCTTGACATGACCTAGCATTCAAGTTTTGTGCCCGTAAAACAT
CATTTTCATCACACACGTAAAAAGGGAGTGTCGGTACTTATGCAAGTATGAGAAAGGAGAATAATCAAAAGAAAAGCCAA
AATTGCGCTAGCTTGCTTTTGACCTCACAAGTCATTAGTATAGGTAAAGAGAGCAAAAATAGAAGAGAAAGACCTAGGAT
CTGGTGAGGAAAGAAGAATATGAGAAGAGAAGGTGTGGGAATGGTTCAAGGCGTGGGGGAATCTGTGTTTGGGTAGTGGC
ACGCGAACTTATCGCCCAAAATCATGAGGCTTTAAGCCTCTTTTATTAAAAGGGTCTTTTACACTTCCCAAAATCCCAAG
AGAAGGGCCAAGAGTGACCCCTTAAATTAAAGACAAGAGACTTTTAAAAGAAATAAAGCAAAACCCAAGAAGAGTGTCTC
TTGGTGCAGGCCCAGGGCAGGGCTTCTCTAGCGCCGGTGTCTCCGCTTTGCGGTGTTGGCAATTTTGCCTGTTCGCCACC
AAAATATATGGATGAGTTTCATAGGGTGAGCGTGGAATTGCATTTTAAATGGTGTTTTCTTTAAAATAAATTTTTTTATA
TTTTAATATATTCTAAAAAAAAAAAACACTTTAAAAAATTACCATGCAACATTTGCAAACACCGCTAAAATCAGCTTCGT
ACGAACCCTTCCAAAGGAAACTTTTTTCTACTCGACAATCTCTTTGCTGACATTCTGCACTCTTGTTTCCAATATTCCTC
TCTCTCTCTCTCTCTCTTTCTTGCACAATATGGCTTTGGCTTTGACCACCTTTAGTTCTTACGTACGAATTCTCGATGAC
TACCTACTTATTTTGTGCACTACCAAGTAGCAAGTGACCAAGTGGATAGTCTCTTAATTTGTGGGAAGAGCCTACACACC
TGTAGTCAGTCCTTCCATGGAATAGTCTTGTCATTAGTTACTCAGCCCTTACCCTATTAAGTTACGTATTTAAATCAAAA
TCAATTAAATTATATATATATAAAAAAGCAAACTAAGAAGCCTAGGAAAATATATTTATGGGTTCAATTCTCTCAATCTC
TCCCCGTGGTTCAATTCTAAGATATTTCTCTTCAACGACTTATCCATTACAATAAGGCTTCCATAAGGAGGATTTGTTTA
TGCTTAGGTACACATAAGCCAAGTATCTTATTCTCCTTTTTAGCATAAAATACAATAAGGTTAATTTAATTAAATGGAAT
GCAAGGCATGATGATATAAAAAGACGGGTATTAAAATATAATCAATATATTCTTAAAATAAAGGTACAATCAAAAGGAGT
TGTTTGGGTTTTTTGGTGAAGAGGAACATTTCAGGTGGCATGCGTTTGATTTTATTGAGTACAAACTAAGCATGAGAAAC
CCTAAAAGTAAGTTGCTCCCCTTGACATCATTCCCCTCACCTTCTTCACCTTCTCATCCCGAGGCAAAACCTACCAGTAT
ACATTCTCTTCCTCCCCCACACCTTGCCTCCTCACTCCATTCTCTCCCTTTCTCCCCGAGTCCCAGGTCCCTTCTTTATG
GCCTTGATCACTCGACTTCTCTTCCTATAATTCTATACATCATCAAGAAATATCATGAGCTTGTTAGTTATTTCTCTTCT
TCTTCTTCAAACCTTAGTTGAGTTGATTGCTTGTACATTCCATATGATATCTTGACTGATCCAACCCAATAGCCAGCTTT
TGTTTCTGGATCATGCTAATCAAATTAGCATCGCCCCACTTGATCTCTATTAACATAAGCTCAACTCTTTATAGCTAGTT
TTTCAATTTCTTCTTGGTGCAACGATAATCTCTTTCTTTTTGTTTGGAACTAACAATAAGTTGTAGTTATTTTGTTGCTA
TTGCTTTTGATCTGTTGTTTTATTTCTCCCCTATTGTTTTTGAATCCCACTTAATTAATTATAATTGAATAATAGGGTTT
GCTTTAATCGATATATTTTCATACTCGATCGTGTTTGATAAATATTTTGGAATATATTTATTATTTGTCCCTTAAAAAGT
CTTGGATCTTTTTGCTTTTGAAAATAAGACTTGAAGTTAATTGACTGAGTTCAAGGAATATATCATAAGTGATCATGATA
TCAAGATCCCACTCCATGACTACAACCACCAACAAGATCACCACCTCCACCTCTTACTCCACCAATCCACCATCCTTTTT
CTTACCAAGAGATCTAGATACCCTAAATGATCATATTATTGTCCCTTGAAAAGTAGTTTGGGGCCATATCTAGCTAGTTC
TTTATTCAAGTACACACTTTTCCCTTTTAGTTGGTAATTAAGTGGTACCGAGCCTGCGACTTTATAAAAGCTAAAACCAT
GTTCGCATTATTTTTCATGAATTTTTCATGGTGTCTGTGTGTACATGTTTCTTCTTGCATAATCATTTGCCTCTTCTTAT
AAGAAGAGACACTGTAATAATTGCTGGATGCTATGGAAAC