| Basic information from miRBase |
| hairpin accession number: MI0002208 |
| Located between position 6921900 and 6921997 on chromosome scaffold_16 strand - |
| mature miRNAs for MI0002208: |
| ptc-miR160h (MIMAT0001914): TGCCTGGCTCCCTGCATGCCA |
| References |
| [1]Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" |
| [2]Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" |
>promoter (3kb upstream pre-miRNA, by PMRD):
TTCAACGAGCTTGGTCGAGGAAGCTATGGTTTTGTTTATAAAGCAGTTCTAGCTGATGGGAGACAGGTTGCAGTCAAAAG
GGCAAATGCTGCCACGATAATTCACTCTAATAGCAGGAATTTTGACATGGAATTGGAGGTCCTCTGCAACGTTCGGCATT
GCAATATTGTGAACTTGTTAGGTTACTGCTCAGAAATGGGGGAAAGGCTGCTTGTCTACGAGTATATGCCCCATGGCACG
CTTCATGATCACCTCCATGGTGGGCTTTCTCCTCTGAATTGGAGCCTTAGGTTGAAGATTTCAATGCAGGCTGCCAAGGG
ACTTGAGTACCTTCACAAGGAAGCAGAACCGCCAATTGTCCATCATAATGTCCAGACTTCAAACATCCTTTTGGATTCTG
ACTGGGGAGCACGAATCGCAGATTTTGGGCTTCTTTCAGCAAATGAGAAGGATCTTTGTGGAGATATGAAAAGTGATGTA
TACAACTTTGGAATTGTACTGCTAGAGATTCTTAGCGGAAGAAAAACCTATGATAGAGATTACACTCCACCAAATATTGT
TGAGTGGGCTGTGCCATTAATTAAACAGGGCAAAGCAGCTGCCATAATTGATAGATATGTGACTTTTCCAAGAAATGTCG
AGTCCCTACTTAAAGTTGCCGATATAGCAGAATTGGCTGTGAGGGAAAATCCTAACGAGCGACCTACTATGTCGGATGTG
GCAACCTTTCTAGAGCAAATTGTGAAGGATGGATTGCTCTTGTAGTCTTCAGACAGGATCCTTAGATGTCGATTGAAATT
GATATGACGAAAGAGGTACCATTACCACACCTTCAGCACTGAGTGCTGCTATACGGCTACTGTATACTTCTCTTGAGCAT
TTTTGTACATCACGTTGTTTCAATACCCCTCTTCCCATTTTCTCTTTGTTATCTTTATTTTCATTTATAGATGTGATGGG
GAATTCCATTTGTATACCATTCTACATGTTTTGATCTCCAAGGAAGTTAAAAACAATAAATTTGCCCATCTGAACACTGG
ACAACAATGCCTTGATGTATAGACTAGGACAAATTCATATGAATCAGCTGAAACTCAAATTCCTAGCCCAAAAATTATAT
GAACCACAAAAACGAAAAGTTTGCCAATGCAGTCTTAGTCAATGTTCCAATCAACCACCCTACGTCTAATAATCCTTTGG
TGGTCCCCATGCTCATATATATGCTTGGGAATCTAGATTTAGATTGATGGTCCTTCCTGTTTCAGTGATAAAGAACATTG
CAAATTGCTAGCGATGAGAATTCTTGAATTTAAACCATCACTATTTGTTGATTAATTATCCACGCAAACGTGCTTAAGCA
ACCAGACCACGTATCTATCAATATGACCAGGAACAGACTGTGTAAGCTCTGAAACGTTTAACAAGCTGATGCAAAAGGAA
TTCGACAGTGGATGGTGGTAATCTTGACAGCAAGAGATAAAATATTGTCAAGTCCGCACCATATTAGCTTTCAGACACAG
CTTCTCTTTCTCTATCTCTTAATTTTGTCTTATTCAGTCTCAATGTTTTCTCCAGGGCATTCTTAACGAATGCATTGATA
AGAATTGATTAACACGTGTATCTGAAAAGAGATTGATTAATAAATGCACTATTATTATATGTGCAACTAGTCAGATAATA
TTGCATACTATCAGTAGTTTTCTGAATGCAATTTGTCATTGTCATGGCTGGATCTAAGTGCTCATTGGATGTTTTCGTGG
GCTAAAGTTTATTGGAGAGGATCGAATTCCCTTTATTGTCCTGAAGCACACTGTGGGGATCCATCTTTTTTGCAGAAAAG
TTTCTATGATTATGCTGAAGAGTGATGATCTCATAAGCTTGAGCTAAAAGTTGTTGATACCAGATATTCAGAACTGGAGT
TTGACTCCATCTGCTTAGAGTATGGTCAAGCATTTGTGAAACCTGCAAGAGTTAAACAGGAAAAGAAGAAACTGAACCCT
TATGATTATAATGGACAAATGGAATAGCTTTGTGAGAGATTACAGACAGTAGTAAAAGCTAGATTTTTGGAAAAGAGATG
AGGATGCTGGTGTGGAGCACCTGGCTGCAGATGGAAGAGAGAGAAGAATCTGAGCCATTTAGATCACAAGGCCTGTTCAA
ACACGAAGGTGGTGCCACCGCCCCCACTCAAGGGACCTTTCATTCCAGTAAAGCATTTTCCAGAACTGATTGAACATGAC
AGCTTTTCTATCAACTTGACATTGAATTATTCGAAGACCATTCTGCTCCAATCCAGAGGATAAGTCCCATTTTAAGAACC
ATCTTTCTCTAGCGCCCCCAAGCACTCCCACGCATTTCAGTTTCAGAAAAGGAAAAGAGCCTTCGCTTTATGATCCTAAA
AAAAAAAAGAGAAAGGAAAAATTGCCAATTGCCAACCTCGTTTATTTCTCTCAACCTCGTGTATTTCTCTTTCTATCTCC
TTAAATCTTCTATGATACACTTTTAGGCTCACACGCATATCTCTGTAGCCTTCACCATATTTACAGACAAAATATAGAAA
GAAAGAGCCTTTCAGGTAAAGTGTTTCTCTGTAGTTTGTTTTCTGTATGCCAAAAATCCTTCTCAAAAGCTAGTTGGTTT
TAAACAATGAAGAAAGGGAGGTATGGTGTGGACAATCCCTTAGAAACCAACTTGATTGTCCCATTTTGGCAAGAAGGGAT
CTATTTATCCATGCTTTCCTGTTGCAATGCTCTTGCTCCTTGTGTTATGGTGCTTCCAAACAGCAGGCACTTTCATGCCT
CATTATTTCAAGGTGGTGAACAATATTTATGAAATTTAACATATCTTTTCTGGTTTGAACTTTTGAAGTTGCAGCATATA
ATGCTTAGATATATTAATACAAATGCACTGTTTTTCTTGTCTAACAGAAACTAATTGAGCTCCGTTTGATCTCCAAAAAG
CTTCATGTATCAATTCAGACTAAAATATGTGCCTGTGTGA