miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0002260
Located between position 31302159 and 31302295 on chromosome scaffold_1 strand -
mature miRNAs for MI0002260:
         ptc-miR169j (MIMAT0001966): TAGCCAAGGATGACTTGCCTG

References
[1]Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




>promoter (3kb upstream pre-miRNA, by PMRD):
TAACATATCAACCAAGAACCATTATTTTTAGCTAAACCATTACAACACCAATTTTTTTTCATTAAGGATATAGTCTCTTT
TCCATGAAAAAAAATTTCAAGATCAAGATATATAAATACATCTAGTCACCAGTCATGAAAGCCAAAACAGAACCAAAGAA
CAATTTTTAAAAAGAAAAGCTAGCTAAAGGCCATGGAAGCCAGCCAAAAGTCATAATAGCTAGGTCCAAATCATTGAAAG
TCAAGCCAGCTCAGACTAGTCCATACAATTTCTAAGATAGATATACACTCCCTGACCGTTATTTTAATTTTTCTCTTTCT
ATATATTTTTCTTATATATGTACTTACTTAATTTAAGTATCAAAAAGTTCTTTGTTTTTTAAGTGATTTATTTTGTTAGG
TTTAATGCTTTACTTATCATTTCATATTTCCTCCATTATTTTTTTTTTGAACTTTGGAATAAACTAATATCTAAGAAAAA
TAGTTTTTTTTTTTTAATTTAATTAAAGGGATATGTGATGCAATCCAATCCACAATCCAATCCACACCAAAGAATCAATT
AGTAGTTCTTGCAGACCTAATCACAAGCGCTAGGGCAAAGAAGTTCAAGGAAGTCTTTAATTAACTTTTACAAGACACAT
GACCAAGGTGAACTATAAAAGAGCAACAATTACAAGAACAAGAAGCCTTAATAAATTTGATTCGTATCCAAGACGGGCTC
AAGAACCATGGGTTTCGCCCAAGGGAGTAATTTCAGCATTATTGAGCTTGTTTCGTCAAGTATATATTTTGTGTTTTCTA
ATCCAACAAGAAAATCATGAATTACTTGGAAAAAAAATCTAATCTATCAAAAAGATTTAATTGGAAGGAAAGTCCTACTC
TACCATAGACACCAAAGGCAGCGGCAAACTACAATTATTGGGACAAGAAAATCTCCTAATCTATTTCTCAAAGAGAAGTG
GCGGCATGGAAGGATTTTACATCCAAACAATTATTTCTCTTGCATTGTTTTTAGGTATTAGTTGCAGCACCATAGGATAA
AATTTTTAGAATATTTATTTAATTATTTTTAAGTTAATTAGTTAGTTTTTGGGTTATTTTGGATATAGTTTCAAATTCAG
TTAAGTAAGCCCATTAATTAAGTTATCTTAGAAGTTTATTTCTAATAGTATAAATACTTTTTTATAAGATTTAATTTTCA
TATTGTAATACACATTAATTGTTGCATATTGAAGCATAGAGAATAAATATTTTTTTGTTTGGTTTTTGATTGAACTACAC
TCTTCAAAGAATTGAATAATCTTTGTTGTGATTTTATACATTTTATGCTCGTCTTCAGGTGAAGATATTGTGTGAGGGTG
GTTATTATAGTCTTGATTTTTTAAGACAGGTCGTCTATTATGTCAAGCTCAATTATCAATCTCAAATCTCAATTAGGTTC
GCGAATTCAATTAAAAATCCCGCTAGGGTTCGCTTCAATATGTATTTTAAAATTACTAGAAAAGATGATTTTATATATAT
TGATAAATTTATGCAAGTTGATACAAAGATCTTACAAAGAAAATATCTTCATGACTTTTTCCATACATATGTTCGTGTAA
ATCAGTACTGACTTGAAAAGGTTAGCATTTTGCATGAAATATTGAGTTTTATTCTTCTGCGTATAACTTCTCAGCTTTAA
ACGAGGGAAAGAGGGTAATTCAATGTGTAAGCACTGACGCGGCCTCAATCTCAAAGTCAATCGGAACAATAGAACCTTTA
TACGGTGGCAACGCCATTGACCTGAATTTTTCGGTGGGGGCATCTGCCTATCACTAGTGGCTCGGTATTGCCTTGGGAAT
CATGTGCTTTCAACATTAAAGAATATAAAAAGGCCAAGAGAGAAGCCATGCAATATTCAGGTTATCTTTTTCTCAAGATT
TTGTGATTCCTTCCAATCATAATGATTTAAGGCATGTATGAAGGTCATTGAAATTACTAGGAAACGAAGAATAAATCACG
TCAGAGGCCCATTTGCCTTCAAATCATGCTACTGCTTTTTTAGCAGCGGTCCAGAATTCGAAACCACAAAAAGAGCATGA
AAGCAAGTAATTAAGCGGACGAACGCTCATTAACTTCAAAATTTATGCTAATTTTGTGTTAATCAAGTACATTTTCATGC
AAATCATATTGTGATTAACTACTGTTAATATCATCAAATTAATGATGCCAAATTTATTGAACGGACACTGCACACATCCC
AATATCAATGGGAATTAATCAAGACAAGTTGATGAGGCATATCTTGACTGTCGCAGGGACTAGCTAGGGGGACAAGTATC
CAGTGAATGATCTGAAGGTCAAATGCAAGTTGCTTCTTGCCTGACTAACGTGCTAGATGATCGAAACCTTCGAGGGTTTT
CTTTCCTTGCAAAAATTCTATCTCCATCGTTGTATCAGTGACATGTAGCAAATAATCATGCAAGGAGAATATATTCCATT
ATGGATAGGTTAAATTATGCACTTGATAGGTGGAAGAAAGATACAGAAAGTAAATTTATAATGGATGAGGCGCATAAATA
ATTGACCGGAAATGATTTTTCCATTCACGATACGAATATGGTCTTGATTCTTTTATATGGGCTATAAAAGGAAACTGAGA
ACATTTGTTTTGAGCATACAATTAATGGAGTATAGCTAGAGGTGCGTAGCTGATATTAGAGGAAGAGAGGCCTAGCATGA
AGGTAAAGAGTCTTGTTTGGTAGCCAAGGATGACTTGCCTGCTCCATTGTAGGAGGTTTCCGAAAAAATGCAGACATGTA
TAATTTCGAAACCCCTGTTTCGTTTCAGGCAGTCTCCTTGGCTAACTTGACTGGCTCTTTCCTGCCATGCTATGCCCTTC
TCTTCTTCACCAATAAGCCCTCGCTCATGCTATTTGGTGCCGCGTACGTAAACTAACACTTGTACGGTGCCATTGGGCAA
TCACTTTGAGAGGAAGGGAGGCCTTACATGAAGACAAGAG