| chr | coordinates | strand | name | NCBI | UCSC | observed | class | function | loctype |
| chr3 | 49033562-49033562 | + | rs34414160 | G | G | -/G | deletion | intron,near-gene-5 | exact |
| chr3 | 49033582-49033582 | + | rs34635345 | G | G | -/G | deletion | intron,near-gene-5 | exact |
| chr3 | 49033797-49033797 | + | rs72934791 | G | G | G/T | single | intron,near-gene-5,untranslated-5 | exact |
| chr3 | 49034699-49034699 | + | rs35298958 | G | G | -/G | deletion | intron,near-gene-5,untranslated-5 | exact |
| chr3 | 49035722-49035722 | + | rs71716721 | C | C | -/C | deletion | untranslated-3 | exact |
| chr3 | 49036079-49036079 | + | rs13085163 | G | G | A/G | single | near-gene-3 | exact |
| chr3 | 49036332-49036332 | + | rs6414614 | T | T | C/T | single | near-gene-3 | exact |
| chr3 | 49036662-49036662 | - | rs3891188 | G | G | C/G | single | near-gene-3 | exact |
| chr3 | 49036663-49036663 | - | rs3891187 | C | C | C/G | single | near-gene-3 | exact |
| chr3 | 49036668-49036668 | + | rs59249086 | G | G | A/G | single | near-gene-3 | exact |
| chr3 | 49036736-49036736 | + | rs1134122 | C | C | A/C | single | near-gene-3 | exact |
| chr3 | 49036823-49036823 | - | rs1049818 | G | G | C/T | single | coding-synon | exact |
| chr3 | 49036954-49036956 | + | rs5848860 | CTT | CTT | -/CTT | deletion | frameshift | range |
| chr3 | 49037001-49037001 | - | rs72624919 | G | G | C/G | single | missense | exact |
| chr3 | 49037016-49037095 | + | rs71864469 | unknown | unknown | (LARGEDELETION)/- | named | intron | range |
| chr3 | 49037262-49037262 | - | rs72624918 | G | G | C/T | single | intron | exact |
| chr3 | 49037289-49037289 | - | rs72624917 | G | G | C/T | single | intron | exact |
| chr3 | 49037308-49037308 | - | rs72624916 | G | G | C/T | single | intron | exact |
| chr3 | 49037243-49037335 | + | rs71644645 | unknown | unknown | (LARGEDELETION)/- | named | frameshift | range |
| chr3 | 49037375-49037375 | - | rs11557540 | T | T | A/G | single | missense | exact |
| chr3 | 49037387-49037387 | - | rs72553872 | A | A | A/T | single | missense | exact |
| chr3 | 49037395-49037395 | - | rs72553873 | A | A | C/T | single | coding-synon | exact |
| chr3 | 49037481-49037565 | + | rs71680092 | unknown | unknown | (LARGEDELETION)/- | named | frameshift | range |
| chr3 | 49037891-49037891 | - | rs3929975 | T | T | A/C | single | intron | exact |
| chr3 | 49037892-49037892 | - | rs3929974 | G | G | A/C | single | intron | exact |
| chr3 | 49038207-49038207 | + | rs73082350 | G | G | A/G | single | intron | exact |
| chr3 | 49038463-49038462 | + | rs34556154 | - | - | -/G | insertion | intron | between |