Parental gene:

HNRPC, ENSBTAG00000011396

Aliases:LOC510852, HNRNPC, HNRPC
Description:heterogeneous nuclear ribonucleoproteins C1/C2 [Source:RefSeq peptide;Acc:NP_001029567]
Organism:Cow (Bos taurus)
Coordinates:10:25936104..25980839(+)


>ENSBTAG00000011396
ATGGCCAGCAATGTTACCAACAAGACGGATCCTCGCTCCATGAACTCTCGTGTATTCATTGGGAATCTCAATACCCTTGT
GGTCAAGAAATCTGACGTGGAAGCAATCTTCTCAAAATACGGCAAAATCGTGGGTTGCTCTGTTCATAAGGGCTTTGCCT
TCGTTCAGTATGTTAATGAGAGAAATGCCCGGGCTGCTGTGGCAGGAGAGGATGGCAGAATGATTGCTGGCCAGGTTTTA
GATATTAATCTGGCTGCAGAGCCAAAAGTGAACCGAGGAAAAGCAGGTGTGAAACGATCTGCAGCGGAGATGTACGGCTC
ATCTTTTGACTTGGACTATGACTTTCAACGGGATTATTATGACAGGATGTACAGTTACCCAGCACGTGTTCCTCCTCCTC
CTCCTATTGCTCGGGCTGTAGTGCCCTCAAAACGCCAGCGTGTATCAGGAAACACCTCACGAAGGGGCAAAAGTGGCTTC
AATTCTAAGAGTGGACAGCGGGGATCTTCTTCTAAGTCTGGAAAGTTGAAAGGAGATGACCTTCAGACCATTAAGAAGGA
GTTAACCCAGATAAAACAAAAAGTGGATTCTTTACTGGAAAGCCTGGAAAAAATTGAAAAGGAACAGAGCAAACAAGGAG
TAGAGATGAAGAATGATAAGTCAGAAGAGGAGCAGAGCAGCAGCTCCCTGAAGAAAGATGAGACTAATGTGAAGATGGAG
TCTGAGGGGGGTGCAGATGACTCTGCTGAGGAGGGGGACCTACTGGATGATGATGATAATGAAGATCGGGGGGATGACCA
GCTGGAGTTGATCAAGGATGATGAAAAAGAGGCTGAGGAAGGAGAGGATGACAGAGACAGCGCCAATGGCGAGGATGACT
CTTAA

Library Parental gene expression (RPM)
SRP017611_brain 94 .65 RPM
SRP017611_kidney 118 .84 RPM
SRP017611_liver 50 .59 RPM
ERP005899_muscle 109 .70 RPM
ERP005899_liver 67 .41 RPM
SRP030211_testis 112 .53 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000005504 possible_ortholog 1 retrogene
retro_cfam_1140,
Homo sapiens ENSG00000092199 possible_ortholog 2 retrogenes
retro_hsap_1624, retro_hsap_3740,
Gorilla gorilla ENSGGOG00000023015 possible_ortholog 1 retrogene
retro_ggor_1046,
Macaca mulatta ENSMMUG00000014809 possible_ortholog 4 retrogenes
retro_mmul_1112, retro_mmul_205, retro_mmul_468, retro_mmul_503,
Mustela putorius furo ENSMPUG00000000164 ortholog_one2one 2 retrogenes
retro_mputfur_231, retro_mputfur_241,
Nomascus leucogenys ENSNLEG00000014362 possible_ortholog 2 retrogenes
retro_nleu_1828, retro_nleu_59,
Oryctolagus cuniculus ENSOCUG00000015029 possible_ortholog 1 retrogene
retro_ocun_138,
Otolemur garnettii ENSOGAG00000012543 possible_ortholog 1 retrogene
retro_ogar_165,
Pongo abelii ENSPPYG00000005593 possible_ortholog 6 retrogenes
retro_pabe_1116, retro_pabe_1263, retro_pabe_1342, retro_pabe_2, retro_pabe_722, retro_pabe_780,
Pan troglodytes ENSPTRG00000006118 possible_ortholog 2 retrogenes
retro_ptro_1089, retro_ptro_2539,
Rattus norvegicus ENSRNOG00000011621 possible_ortholog 1 retrogene
retro_rnor_922,
Tupaia belangeri ENSTBEG00000011514 ortholog_one2one 11 retrogenes
retro_tbel_1738, retro_tbel_2114, retro_tbel_2475, retro_tbel_2838, retro_tbel_2849, retro_tbel_3094, retro_tbel_3293, retro_tbel_3776, retro_tbel_3903, retro_tbel_3937, retro_tbel_818,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1084 80.23 57.82
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2. retro_btau_1142 84.08 96.94
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Download FASTA sequences of all ENSBTAG00000011396 retrocopies