RetrogeneDB ID: | retro_cfam_1140 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 24:8997729..8998492(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000005504 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80. % |
Parental protein coverage: | 75.75 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGE |
MASNVTNKTDP.SMNSRVFIGNLNTLVVKKS.VEAIFSKYGKIVGCSVHKGFAF.QYVNERNA.AAVAG. | |
Retrocopy | MASNVTNKTDPSSMNSRVFIGNLNTLVVKKSYVEAIFSKYGKIVGCSVHKGFAFIQYVNERNAQAAVAGK |
Parental | DGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVPEHPSPSPLLSSSFDLDYDFQRDYYDRMYSYP |
DGRMIAGQVLDINLAAE.KVN.GKAGVKRS..EMY.SVPEHPSPSPLLSSSFDLDYDFQ.DYY.RMYS.P | |
Retrocopy | DGRMIAGQVLDINLAAESKVNQGKAGVKRSVVEMYRSVPEHPSPSPLLSSSFDLDYDFQQDYYNRMYSFP |
Parental | ARV-PPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSSKSGKLKGDDLQTIKKELTQIKQKVD |
A.V.PPPPPIA.AVVPSK.QRVSGNTS.R.K.GFNSKSGQ.GSSSK.GKLKGDDLQTIKKELT.IKQKVD | |
Retrocopy | ACVPPPPPPIACAVVPSKYQRVSGNTSGRDKRGFNSKSGQQGSSSK*GKLKGDDLQTIKKELT*IKQKVD |
Parental | SLLESLE-KIEKEQSKQTDLSFSSPVEMKNDKSEEEQSSSSLKKD |
SLLESLE.K.EKE.SKQ.........E.....S.........K.. | |
Retrocopy | SLLESLE>KTEKERSKQGVEMKNDKSEEEQNSSSLKKDETNVKME |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .34 RPM | 97 .61 RPM |
SRP017611_brain | 0 .00 RPM | 53 .19 RPM |
SRP017611_kidney | 0 .07 RPM | 128 .64 RPM |
SRP017611_liver | 0 .00 RPM | 32 .49 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000011396 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000005504 | 1 retrocopy |
retro_cfam_1140 ,
|
Homo sapiens | ENSG00000092199 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000023015 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000007682 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000014809 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000000164 | 2 retrocopies | |
Mus musculus | ENSMUSG00000060373 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014362 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000015029 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012543 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005593 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000006118 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011621 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000011514 | 11 retrocopies | |
Tarsius syrichta | ENSTSYG00000003305 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000016055 | 2 retrocopies |