Parental gene:

ENSCAFG00000005504

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:15:18240401..18269719(-)


>ENSCAFG00000005504
ATGGCCAGCAATGTTACCAACAAGACAGATCCTCGCTCCATGAACTCCCGTGTATTCATTGGGAATCTCAATACTCTTGT
GGTCAAGAAATCTGATGTGGAGGCAATCTTCTCAAAATACGGCAAAATCGTGGGTTGCTCTGTTCATAAAGGCTTTGCCT
TCGTTCAGTATGTTAATGAGAGAAATGCCCGGGCTGCTGTGGCAGGAGAGGATGGCAGAATGATTGCCGGCCAGGTTTTA
GATATTAATCTGGCTGCAGAGCCAAAAGTGAACCGAGGAAAAGCAGGTGTGAAACGTTCTGCAGCGGAGATGTACGGGTC
AGTACCAGAACACCCTTCTCCGTCCCCTCTACTCAGCTCCTCTTTTGATTTGGACTATGACTTTCAACGAGATTATTATG
ACAGGATGTACAGTTACCCAGCACGTGTACCCCCTCCTCCTCCAATTGCTCGCGCTGTGGTTCCCTCGAAACGTCAGCGT
GTATCAGGAAACACCTCACGAAGGGGCAAAAGTGGCTTCAATTCTAAGAGTGGACAGCGAGGATCTTCTTCCAAGTCTGG
AAAGTTGAAAGGAGATGACCTTCAAACCATTAAGAAGGAGTTGACCCAGATAAAACAAAAAGTGGATTCTCTACTGGAAA
GCCTGGAAAAAATTGAGAAAGAACAGAGCAAACAAACAGACTTGTCCTTCTCATCCCCAGTAGAGATGAAGAATGATAAG
TCAGAAGAGGAGCAGAGCAGCAGCTCCCTGAAGAAAGATGAGACTAATGTGAAGATGGAGTCTGAGGGGGGTGCAGATGA
CTCTGCTGAGGAGGGGGACCTACTGGATGATGATGATAATGAAGATCGGGGGGATGACCAGCTGGAGTTGATCAAGGATG
ATGAAAAACTGAGGAAGGAGAGGATGACAGAGACAGCGCCAATGGCGAGGATGACTCTTAAGCACATAGTGGGGTTTAGA
AATCTTGTCCCATTATTTCTTTACCTAGGCGCTTGTCTAAGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 97 .61 RPM
SRP017611_brain 53 .19 RPM
SRP017611_kidney 128 .64 RPM
SRP017611_liver 32 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000011396 possible_ortholog 2 retrogenes
retro_btau_1084, retro_btau_1142,
Homo sapiens ENSG00000092199 possible_ortholog 2 retrogenes
retro_hsap_1624, retro_hsap_3740,
Gorilla gorilla ENSGGOG00000023015 possible_ortholog 1 retrogene
retro_ggor_1046,
Microcebus murinus ENSMICG00000007682 possible_ortholog 2 retrogenes
retro_mmur_1439, retro_mmur_863,
Macaca mulatta ENSMMUG00000014809 possible_ortholog 4 retrogenes
retro_mmul_1112, retro_mmul_205, retro_mmul_468, retro_mmul_503,
Mustela putorius furo ENSMPUG00000000164 possible_ortholog 2 retrogenes
retro_mputfur_231, retro_mputfur_241,
Mus musculus ENSMUSG00000060373 possible_ortholog 1 retrogene
retro_mmus_1388,
Nomascus leucogenys ENSNLEG00000014362 possible_ortholog 2 retrogenes
retro_nleu_1828, retro_nleu_59,
Oryctolagus cuniculus ENSOCUG00000015029 possible_ortholog 1 retrogene
retro_ocun_138,
Otolemur garnettii ENSOGAG00000012543 possible_ortholog 1 retrogene
retro_ogar_165,
Pongo abelii ENSPPYG00000005593 possible_ortholog 6 retrogenes
retro_pabe_1116, retro_pabe_1263, retro_pabe_1342, retro_pabe_2, retro_pabe_722, retro_pabe_780,
Pan troglodytes ENSPTRG00000006118 possible_ortholog 2 retrogenes
retro_ptro_1089, retro_ptro_2539,
Rattus norvegicus ENSRNOG00000011621 possible_ortholog 1 retrogene
retro_rnor_922,
Tupaia belangeri ENSTBEG00000011514 ortholog_one2many 11 retrogenes
retro_tbel_1738, retro_tbel_2114, retro_tbel_2475, retro_tbel_2838, retro_tbel_2849, retro_tbel_3094, retro_tbel_3293, retro_tbel_3776, retro_tbel_3903, retro_tbel_3937, retro_tbel_818,
Tarsius syrichta ENSTSYG00000003305 possible_ortholog 3 retrogenes
retro_tsyr_1004, retro_tsyr_1326, retro_tsyr_1411,
Tursiops truncatus ENSTTRG00000016055 possible_ortholog 2 retrogenes
retro_ttru_1299, retro_ttru_1490,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1140 80.00 75.75
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Download FASTA sequences of all ENSCAFG00000005504 retrocopies