RetrogeneDB ID: | retro_ocun_138 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL019250:4915..5836(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000000339 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPC | ||
Ensembl ID: | ENSOCUG00000015029 | ||
Aliases: | HNRNPC, HNRPC | ||
Description: | Heterogeneous nuclear ribonucleoprotein C [Source:UniProtKB/Swiss-Prot;Acc:O77768] |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGE |
MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGE | |
Retrocopy | MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGE |
Parental | DGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVPEHPSPSPLLSSSFDLDYDFQRDYYDRMYSYP |
DGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVPEHPSPSPLLSSSFDLDYDFQRDYYDRMYSYP | |
Retrocopy | DGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVPEHPSPSPLLSSSFDLDYDFQRDYYDRMYSYP |
Parental | ARVPPPPPIARAVVPSKRQRVSGNTSRRGKSFNSKSGQRGSSSKSGKLKGDDLQAIKKELTQIKQKVDSL |
ARVPPPPPIARAVVPSKRQRVSGNTSRRGKSFNSKSGQRGSSSKSGKLKGDDLQAIKKELTQIKQKVDSL | |
Retrocopy | ARVPPPPPIARAVVPSKRQRVSGNTSRRGKSFNSKSGQRGSSSKSGKLKGDDLQAIKKELTQIKQKVDSL |
Parental | LESLEKIEKEQSKQGVEMKNDKSEEEQSSSSQKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQL |
LESLEKIEKEQSKQGVEMKNDKSEEEQSSSSQKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQL | |
Retrocopy | LESLEKIEKEQSKQGVEMKNDKSEEEQSSSSQKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQL |
Parental | ELIKDDEKEAEEGEDDRDSANGEDDS |
ELIKDDEKEAEEGEDDRDSANGEDDS | |
Retrocopy | ELIKDDEKEAEEGEDDRDSANGEDDS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .43 RPM | 37 .86 RPM |
SRP017611_kidney | 1 .72 RPM | 34 .36 RPM |
SRP017611_liver | 0 .69 RPM | 19 .27 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000011396 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000005504 | 1 retrocopy | |
Homo sapiens | ENSG00000092199 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000023015 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000007682 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000014809 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000000164 | 2 retrocopies | |
Mus musculus | ENSMUSG00000060373 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014362 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000015029 | 1 retrocopy |
retro_ocun_138 ,
|
Otolemur garnettii | ENSOGAG00000012543 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005593 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000006118 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011621 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000011514 | 11 retrocopies | |
Tarsius syrichta | ENSTSYG00000003305 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000016055 | 2 retrocopies |