Parental gene: | SKP2, ENSBTAG00000013562 |
| Aliases: | None |
| Description: | S-phase kinase-associated protein 2 [Source:RefSeq peptide;Acc:NP_001095522] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 20:38078911..38116310(-) |
>ENSBTAG00000013562
ATGCACAGGAAACACCTCCAGGAGATACCCGACCAGAGTAGCAACGTTACCACCAGTTTCACGTGGGGATGGGATTCTAG
CAAGACTTCTGAACTGCTTTCAGGCATGGGGGTCTCCGCCCTGGAGAAGGAGGAGGTGGATAGTGAGAACATCCCCCAGG
AACTGCTTTCAAACCTGGGCCACCCACAGAGCCCCCCACGAAAACGGCTGAAAAGCAAAGGGAATGACAAGGACTTTGTG
ATTGTCCGCAGACCTAAGCTAAACCGAGAGAACTTTCCAGGTGTTTCTTGGGACTCCCTTCCAGACGAGCTGCTCTTAGG
AATCTTTTCCTGTCTGTGCCTCCCTGAACTCCTGAAAGTCTCCAGTGTTTGTAAGAGATGGTATCATCTAGCATTTGACG
AGTCTCTCTGGCAGACTGTAGACCTCGCGGGCAGAAACCTCTACCCAGATGTGGTTGGTCGGCTTTTGTCCCGAGGGGTG
GTTGCCTTCCGCTGTCCACGATCATTTATGGACCAACCGTTAGTTGAACATTTCAGCCCTTTCCGACTACAGCACCTGGA
CCTGTCGAACTCTGTGATCGATGCGTCTACCCTGCACGGCCTTCTATCTCACTGCTCCAAGTTGCAGAATCTCAGCCTGG
AAGGCCTCCGACTTTCAGATCCCGTTGTTGATAATCTTGCTCAGAACACAAATTTACTGCGACTAAACCTTTCTGGGTGT
TCTGGATTCTCTGAATCTGCCCTGAAGACTTTGCTGAGCAGCTGTTCCAGACTGGATGAACTGAACCTCTCCTGGTGCTA
TGATTTCACTGAAAAGCATGTACAGATGGCCGTTGCACATGTGTCAAAGACCATCACCCAGCTGAATCTCAGCGGGTACC
GAAAGAATCTGCAGAGATCAGATGTCTCTACCTTAGTTGGAAGATGTCCCAATCTTGTCCACCTAGACTTAAGCGATAGT
GTCATGCTGAAAAATGACTGCTTTCCAGAATTTTACCAACTCAACTACCTCCAACACCTGTCACTCAGTCGGTGCTATGA
CATAATACCTGAAACTTTACTTGAACTTGGAGAAATTCCCACATTAAAAACACTACAAGTCTTTGGAATCGTACCAGACG
GTACCCTTCAATTGTTAAAGGAAGCCCTCCCTCATCTACAGATTAATTGCTCCCATTTCACCACCATCGCCAGGCCGACC
ATTGGCAACAAGAAGAACCAAGAGATATGGGGCATCAAATGCCGACTGTCACTGGAGAAGCCCAGTTGCCTATGA
ATGCACAGGAAACACCTCCAGGAGATACCCGACCAGAGTAGCAACGTTACCACCAGTTTCACGTGGGGATGGGATTCTAG
CAAGACTTCTGAACTGCTTTCAGGCATGGGGGTCTCCGCCCTGGAGAAGGAGGAGGTGGATAGTGAGAACATCCCCCAGG
AACTGCTTTCAAACCTGGGCCACCCACAGAGCCCCCCACGAAAACGGCTGAAAAGCAAAGGGAATGACAAGGACTTTGTG
ATTGTCCGCAGACCTAAGCTAAACCGAGAGAACTTTCCAGGTGTTTCTTGGGACTCCCTTCCAGACGAGCTGCTCTTAGG
AATCTTTTCCTGTCTGTGCCTCCCTGAACTCCTGAAAGTCTCCAGTGTTTGTAAGAGATGGTATCATCTAGCATTTGACG
AGTCTCTCTGGCAGACTGTAGACCTCGCGGGCAGAAACCTCTACCCAGATGTGGTTGGTCGGCTTTTGTCCCGAGGGGTG
GTTGCCTTCCGCTGTCCACGATCATTTATGGACCAACCGTTAGTTGAACATTTCAGCCCTTTCCGACTACAGCACCTGGA
CCTGTCGAACTCTGTGATCGATGCGTCTACCCTGCACGGCCTTCTATCTCACTGCTCCAAGTTGCAGAATCTCAGCCTGG
AAGGCCTCCGACTTTCAGATCCCGTTGTTGATAATCTTGCTCAGAACACAAATTTACTGCGACTAAACCTTTCTGGGTGT
TCTGGATTCTCTGAATCTGCCCTGAAGACTTTGCTGAGCAGCTGTTCCAGACTGGATGAACTGAACCTCTCCTGGTGCTA
TGATTTCACTGAAAAGCATGTACAGATGGCCGTTGCACATGTGTCAAAGACCATCACCCAGCTGAATCTCAGCGGGTACC
GAAAGAATCTGCAGAGATCAGATGTCTCTACCTTAGTTGGAAGATGTCCCAATCTTGTCCACCTAGACTTAAGCGATAGT
GTCATGCTGAAAAATGACTGCTTTCCAGAATTTTACCAACTCAACTACCTCCAACACCTGTCACTCAGTCGGTGCTATGA
CATAATACCTGAAACTTTACTTGAACTTGGAGAAATTCCCACATTAAAAACACTACAAGTCTTTGGAATCGTACCAGACG
GTACCCTTCAATTGTTAAAGGAAGCCCTCCCTCATCTACAGATTAATTGCTCCCATTTCACCACCATCGCCAGGCCGACC
ATTGGCAACAAGAAGAACCAAGAGATATGGGGCATCAAATGCCGACTGTCACTGGAGAAGCCCAGTTGCCTATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 3 .47 RPM |
| SRP017611_kidney | 4 .74 RPM |
| SRP017611_liver | 0 .91 RPM |
| ERP005899_muscle | 8 .34 RPM |
| ERP005899_liver | 1 .95 RPM |
| SRP030211_testis | 3 .33 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000006980 | possible_ortholog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000018275 | possible_ortholog | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000013303 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000016025 | ortholog_one2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000009154 | ortholog_many2many | 1 retrogene | |
| Pelodiscus sinensis | ENSPSIG00000008375 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000016823 | ortholog_one2many | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000016814 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_525 | 80.23 | 61.32 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_btau_555 | 88.83 | 81.60 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_btau_1108 | 95.29 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_btau_1612 | 90.00 | 65.80 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000013562 retrocopies