RetrogeneDB ID: | retro_btau_525 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 13:40950548..40951324(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SKP2 | ||
Ensembl ID: | ENSBTAG00000013562 | ||
Aliases: | None | ||
Description: | S-phase kinase-associated protein 2 [Source:RefSeq peptide;Acc:NP_001095522] |
Percent Identity: | 80.23 % |
Parental protein coverage: | 61.32 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | RKHLQEIPDQSSNVTTSFTWGWDSSKTSELLSGMG-VSALEKEEVDSENIPQELLSNLGHPQSPPRKRLK |
RKH.QE.P.Q..N.TTSFTWGW....TS......G.VS.LEKEE.DSE.IPQ.LLSNLGHPQSPP.K.LK | |
Retrocopy | RKHFQETPNQRTNATTSFTWGW-GF*TSDCFQAWG<VSTLEKEEMDSETIPQQLLSNLGHPQSPP*KWLK |
Parental | SKGNDKDFVIVRRPKLNR-ENFPGVSWDSLPDELLLGIFSCLCLPELLKVSSVC-KRWYHLAFDESLWQT |
SKGNDKDF.I.RRPKLN..ENFP..SWDSLPDELLLGIFSCLCLPELLKVSSVC.KR...L.FDESLWQT | |
Retrocopy | SKGNDKDFEIIRRPKLNK<ENFPAISWDSLPDELLLGIFSCLCLPELLKVSSVC>KRQHYLEFDESLWQT |
Parental | VDLAGRNLYPDVVGRLLSRGVVAFRCPRSFMDQPLVEHFSPFRLQHLDLSNSVIDASTLHGLLSHCSKLQ |
VDL.GRNLYPDVVGRLLS..VVAF.CP.SFMDQ.LVE.FSPF.LQHLDLSN.VID..TLHGLLSHCSKLQ | |
Retrocopy | VDLTGRNLYPDVVGRLLS*WVVAFCCP*SFMDQLLVEYFSPFCLQHLDLSNLVIDVFTLHGLLSHCSKLQ |
Parental | NLSLEGLRLSDPVVDNLAQNTNLLRLNLSGCSGFSESALKTLLSSCSRLDELN |
NLSLEGLRLSDP.VDNLA..TNLL.LNLSG.SGFSESALK.LLSSCSRLDEL. | |
Retrocopy | NLSLEGLRLSDPIVDNLAKKTNLLQLNLSGHSGFSESALKILLSSCSRLDELS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .07 RPM | 1 .95 RPM |
ERP005899_muscle | 0 .00 RPM | 8 .34 RPM |
SRP017611_brain | 0 .00 RPM | 3 .47 RPM |
SRP017611_kidney | 0 .00 RPM | 4 .74 RPM |
SRP017611_liver | 0 .00 RPM | 0 .91 RPM |
SRP030211_testis | 0 .02 RPM | 3 .33 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000013562 | 4 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000006980 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018275 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000013303 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016025 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000009154 | 1 retrocopy | |
Pelodiscus sinensis | ENSPSIG00000008375 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000016823 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016814 | 1 retrocopy |