RetrogeneDB ID: | retro_btau_1612 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 8:49880887..49881723(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SKP2 | ||
Ensembl ID: | ENSBTAG00000013562 | ||
Aliases: | None | ||
Description: | S-phase kinase-associated protein 2 [Source:RefSeq peptide;Acc:NP_001095522] |
Percent Identity: | 90. % |
Parental protein coverage: | 65.8 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | NLYPDVVGRLLSRGVVAFRCPRSFMDQPLVEHFSPFRLQHLDLSNSVIDASTLHG-LLSHCSKLQNLSLE |
NLYPDVVGRLLS.GVVAFR.PRSFM.QPLVEHF.PF.LQHLDL.NSVI..ST....LLSHCSKLQNLSLE | |
Retrocopy | NLYPDVVGRLLS*GVVAFRSPRSFMEQPLVEHFGPFLLQHLDL*NSVIHVSTMQA<LLSHCSKLQNLSLE |
Parental | GLRLSDPVVDNLAQNTNLLRLNLSGCSGFSESALKTLLSSCSRLDELNLSWCYDFTEKHVQMAVAHVSKT |
GL.LSDP.VDNLAQNTNLL..NLSGCS.FSESALKTLLSSCSRLDELNLSWCYDFTEKHVQ.AVAHVS.T | |
Retrocopy | GLQLSDPIVDNLAQNTNLL*PNLSGCSRFSESALKTLLSSCSRLDELNLSWCYDFTEKHVQVAVAHVSET |
Parental | ITQLNLSGYRKNLQRSDVSTLVGRCPNLVHLDLSDSVMLKNDCFPEFYQLNYLQHLSLSRCYDIIPETLL |
ITQLNLSGYRKNLQR.DVSTLVGRCPNLVHLDLSDSVMLKNDCFPEFYQLNYLQ.LSLSRCYDIIP.TL. | |
Retrocopy | ITQLNLSGYRKNLQRPDVSTLVGRCPNLVHLDLSDSVMLKNDCFPEFYQLNYLQYLSLSRCYDIIPKTLH |
Parental | ELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIWGIKCRLSLEKPSCL |
ELGEIPTLKTLQVFGIVP.GTLQLLKEALPH.QINCSHFTTIA.PTIGNKKNQE.WGIKC.LSLEKPSCL | |
Retrocopy | ELGEIPTLKTLQVFGIVPEGTLQLLKEALPHVQINCSHFTTIAGPTIGNKKNQETWGIKC*LSLEKPSCL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 1 .95 RPM |
ERP005899_muscle | 0 .00 RPM | 8 .34 RPM |
SRP017611_brain | 0 .00 RPM | 3 .47 RPM |
SRP017611_kidney | 0 .00 RPM | 4 .74 RPM |
SRP017611_liver | 0 .00 RPM | 0 .91 RPM |
SRP030211_testis | 0 .05 RPM | 3 .33 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000013562 | 4 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000006980 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018275 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000013303 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016025 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000009154 | 1 retrocopy | |
Pelodiscus sinensis | ENSPSIG00000008375 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000016823 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016814 | 1 retrocopy |