Parental gene:

ATP6V1D, ENSBTAG00000016309

Aliases:ATP6V1D, VATD
Description:V-type proton ATPase subunit D [Source:RefSeq peptide;Acc:NP_001068609]
Organism:Cow (Bos taurus)
Coordinates:10:79584174..79599910(-)


>ENSBTAG00000016309
ATGTCGGGCAAAGACCGAATTGAAATCTTTCCCTCGCGAATGGCACAGACCATCATGAAGGCTCGGTTAAAAGGAGCACA
GACAGGTCGAAACCTCCTGAAGAAAAAATCTGATGCCTTAACTCTTCGATTTCGACAGATCCTTAAGAAGATAATAGAGA
CTAAAATGTTGATGGGTGAAGTGATGAGAGAAGCTGCCTTTTCACTTGCTGAGGCCAAGTTCACAGCAGGGGACTTCAGC
ACCACAGTTATCCAAAATGTAAATAAGGCCCAAGTGAAGATTAGAGCAAAGAAAGATAATGTAGCAGGTGTTACATTGCC
AGTATTTGAACATTATCATGAAGGAACTGACAGTTATGAACTGACTGGTTTAGCCAGAGGTGGGGAACAGTTGGCTAAAC
TGAAGAGGAATTATGCCAAAGCAGTGGAACTACTGGTGGAACTGGCTTCACTGCAGACGTCCTTTGTTACTTTGGATGAA
GCTATTAAGATAACCAACAGGCGTGTAAACGCTATTGAACATGTCATCATTCCCCGGATTGAACGTACCCTTGCTTATAT
CATCACAGAGCTGGATGAAAGAGAGCGAGAGGAGTTCTACAGATTAAAGAAAATACAGGAGAAGAAAAAGATTCTCAAGG
AGAAGTCTGATAAGGACTTGGAGCAACGGAGGGCAGCCGGAGAGGTGATAGAGCCTGCTAATCTCCTGGCTGAAGAGAAG
GATGAAGATCTTCTGTTTGAATAA

Library Parental gene expression (RPM)
SRP017611_brain 72 .81 RPM
SRP017611_kidney 93 .12 RPM
SRP017611_liver 22 .58 RPM
ERP005899_muscle 32 .10 RPM
ERP005899_liver 44 .63 RPM
SRP030211_testis 117 .31 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008240 ortholog_one2one 1 retrogene
retro_amel_332,
Canis familiaris ENSCAFG00000016369 ortholog_one2one 2 retrogenes
retro_cfam_1186, retro_cfam_999,
Choloepus hoffmanni ENSCHOG00000003733 ortholog_one2many 5 retrogenes
retro_chof_1229, retro_chof_2711, retro_chof_54, retro_chof_926, retro_chof_938,
Cavia porcellus ENSCPOG00000009085 ortholog_one2many 1 retrogene
retro_cpor_36,
Felis catus ENSFCAG00000011078 ortholog_one2one 1 retrogene
retro_fcat_632,
Myotis lucifugus ENSMLUG00000006244 ortholog_one2many 5 retrogenes
retro_mluc_2345, retro_mluc_442, retro_mluc_540, retro_mluc_666, retro_mluc_94,
Macaca mulatta ENSMMUG00000021418 ortholog_one2one 1 retrogene
retro_mmul_1159,
Monodelphis domestica ENSMODG00000009896 ortholog_one2many 5 retrogenes
retro_mdom_1196, retro_mdom_1522, retro_mdom_1730, retro_mdom_390, retro_mdom_594,
Mustela putorius furo ENSMPUG00000007002 ortholog_one2one 2 retrogenes
retro_mputfur_1381, retro_mputfur_748,
Otolemur garnettii ENSOGAG00000015052 ortholog_one2one 1 retrogene
retro_ogar_966,
Sus scrofa ENSSSCG00000002288 ortholog_one2one 1 retrogene
retro_sscr_357,
Ictidomys tridecemlineatus ENSSTOG00000027710 ortholog_one2one 1 retrogene
retro_itri_383,
Vicugna pacos ENSVPAG00000005696 ortholog_one2one 1 retrogene
retro_vpac_232,
Drosophila melanogaster FBgn0040377 ortholog_one2many 1 retrogene
retro_dmel_70,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_408 80.40 100.00
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2. retro_btau_1757 91.13 100.00
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Download FASTA sequences of all ENSBTAG00000016309 retrocopies