Parental gene:

ENSCPOG00000009085

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_20:12065485..12081040(-)


>ENSCPOG00000009085
ATGTCGGGCAAAGACCGGATTGAAATCTTCCCCTCGCGAATGGCGCAGACCATCATGAAGGCCCGCTTGAAAGGAGCGCA
GACAGGCCGGAACCTCCTAAAGAAGAAGTCTGACGCCTTAACGCTTCGCTTTCGACAGATCCTGAAGAAGATCATTGAGA
CCAAGATGCTGATGGGCGAGGTGATGAGGGAGGCCGCCTTCTCCCTTGCTGAGGCCAAGTTCACAGCGGGCGACTTCAGC
ACCACGGTTATCCAAAATGTAAATAAAGCCCAAGTGAAGATCCGGGCGAAGAAAGATAACGTAGCAGGTGTTACTTTGCC
GGTCTTCGAACATTACCATGAGGGAACTGACAGTTATGAACTCACTGGTTTAGCCAGAGGTGGGGAACAGCTAGCTAAAC
TGAAGAGAAATTATGCCAAAGCTGTGGAGCTGCTGGTGGAGCTGGCTTCGCTGCAGACTTCCTTTGTTACTCTGGATGAA
GCTATTAAGATAACCAACAGGCGTGTAAATGCCATCGAGCACGTTATTATACCTCGGATTGAACGTACCCTTGCTTACAT
CATCACAGAGCTGGATGAGAGAGAGCGAGAAGAATTCTATAGGTTAAAGAAAATACAAGAGAAGAAAAAGATTCTCAAGG
AAAAATGCGAGAAGGACTTGGAGCAACGGAGAGCAGCTGGTGAGGTGATGGAGCCTGCAAACCTTCTGGCTGAAGAGAAG
GATGAAGATCTTCTGTTTGAATAG

Library Parental gene expression (RPM)
SRP017611_brain 49 .52 RPM
SRP017611_kidney 34 .65 RPM
SRP017611_liver 18 .24 RPM
SRP040447_lung 23 .18 RPM
SRP040447_skeletal_muscle 18 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008240 ortholog_many2many 1 retrogene
retro_amel_332,
Bos taurus ENSBTAG00000016309 ortholog_one2many 2 retrogenes
retro_btau_1757, retro_btau_408,
Canis familiaris ENSCAFG00000016369 ortholog_one2many 2 retrogenes
retro_cfam_1186, retro_cfam_999,
Choloepus hoffmanni ENSCHOG00000003733 ortholog_many2many 5 retrogenes
retro_chof_1229, retro_chof_2711, retro_chof_54, retro_chof_926, retro_chof_938,
Felis catus ENSFCAG00000011078 ortholog_one2many 1 retrogene
retro_fcat_632,
Myotis lucifugus ENSMLUG00000006244 ortholog_many2many 5 retrogenes
retro_mluc_2345, retro_mluc_442, retro_mluc_540, retro_mluc_666, retro_mluc_94,
Macaca mulatta ENSMMUG00000021418 ortholog_one2many 1 retrogene
retro_mmul_1159,
Monodelphis domestica ENSMODG00000009896 ortholog_many2many 5 retrogenes
retro_mdom_1196, retro_mdom_1522, retro_mdom_1730, retro_mdom_390, retro_mdom_594,
Mustela putorius furo ENSMPUG00000007002 ortholog_one2many 2 retrogenes
retro_mputfur_1381, retro_mputfur_748,
Otolemur garnettii ENSOGAG00000015052 ortholog_one2many 1 retrogene
retro_ogar_966,
Sus scrofa ENSSSCG00000002288 ortholog_one2many 1 retrogene
retro_sscr_357,
Ictidomys tridecemlineatus ENSSTOG00000027710 ortholog_one2many 1 retrogene
retro_itri_383,
Vicugna pacos ENSVPAG00000005696 ortholog_one2many 1 retrogene
retro_vpac_232,
Drosophila melanogaster FBgn0040377 ortholog_many2many 1 retrogene
retro_dmel_70,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_36 97.86 94.74
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Download FASTA sequences of all ENSCPOG00000009085 retrocopies