RetrogeneDB ID: | retro_cpor_36 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_2:10075898..10076648(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000003311 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000009085 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.86 % |
Parental protein coverage: | 94.74 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGEVMREAAFSLAEAKFTAGDFSTTV |
.A.TIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGEVMREAAFSLAEAKFT..DFSTTV | |
Retrocopy | LAETIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGEVMREAAFSLAEAKFTGDDFSTTV |
Parental | IQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQT |
IQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTD.YELTGLARGGEQLAKLKRNYAKAVELLVELASLQT | |
Retrocopy | IQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDGYELTGLARGGEQLAKLKRNYAKAVELLVELASLQT |
Parental | SFVTLDEAIKITNRRVNAIEHVIIPRIERTLAYIITELDEREREEFYRLKKIQEKKKILKEKCEKDLEQR |
SFVTLDEAIKITNRRVNAIEHVIIPRIERTLAYIITELDEREREEFYRLKKIQEKKKILKEKCEKDLEQR | |
Retrocopy | SFVTLDEAIKITNRRVNAIEHVIIPRIERTLAYIITELDEREREEFYRLKKIQEKKKILKEKCEKDLEQR |
Parental | RAAGEVMEPANLLAEEKDEDLLFE |
RAAGEVMEPANLLAEEKDEDLLFE | |
Retrocopy | RAAGEVMEPANLLAEEKDEDLLFE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .17 RPM | 49 .52 RPM |
SRP017611_kidney | 0 .42 RPM | 34 .65 RPM |
SRP017611_liver | 0 .00 RPM | 18 .24 RPM |
SRP040447_lung | 0 .03 RPM | 23 .18 RPM |
SRP040447_skeletal_muscle | 0 .07 RPM | 18 .30 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008240 | 1 retrocopy | |
Bos taurus | ENSBTAG00000016309 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000016369 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000003733 | 5 retrocopies | |
Cavia porcellus | ENSCPOG00000009085 | 1 retrocopy |
retro_cpor_36 ,
|
Felis catus | ENSFCAG00000011078 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006244 | 5 retrocopies | |
Macaca mulatta | ENSMMUG00000021418 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009896 | 5 retrocopies | |
Mustela putorius furo | ENSMPUG00000007002 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000015052 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000002288 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000027710 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000005696 | 1 retrocopy | |
Drosophila melanogaster | FBgn0040377 | 1 retrocopy |