Parental gene:

SCO1, ENSBTAG00000021780

Aliases:None
Description:Protein SCO1 homolog, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:A1A4J8]
Organism:Cow (Bos taurus)
Coordinates:19:30276155..30296404(-)


>ENSBTAG00000021780
ATGGCAGGGCTGTTGCTCGCGCCCGGCCGGATAATGCGGCTTCCGGGCAGCCAACTTTGGCGTCTCTTTCCTCGCGGATT
CGGGGTTTGGGGCCCAGGGAAGGAGACCGCTAGCGTCTTGCTAGGGCGGCTCTGCGCGAGGCCAGAGGAGGCATGGCGGG
CCTCGGGGCTCGCTGCCTGCTGCTTGGGGAGCCGCCCCCTCAGCACTGCAATGCCGCCCCCGCCCGGGTCGTCAGGACCG
GAGTGGAAGGGCAGCGGAGACCCCATGCGCCCCTCGAAGCCCGGGCCTGTTTCCTGGAAGTCTTTAGCCGTCACGTTTGC
TATTGGAGGAGCTTTATTGGCTGGAATGAAGTACTTCAAGAAAGAAAAGACGGAGAAACTGGAGAAGGAACGGCATCGGA
GCATTGGAAAGCCTTTACTTGGGGGCCCATTTTCCCTCACAACTCATACTGGCGAGCCCAAAACTGATAAGGACTACCTG
GGTCAATGGGTATTGATTTATTTTGGTTTTACTCATTGTCCAGATATCTGTCCAGAAGAACTAGAAAAAATGATTCAAGT
CGTGGATGAAATAGACAGTATTCCAACTCTGCCAAATTTAACTCCACTTTTCATCACTATTGACCCAGAGAGGGACACAA
AAGAAGCCATCGCCAATTATGTAAAAGAATTTTCTCCCAAACTGATTGGCTTGACTGGCACAAAAGAAGAGATCGATCAA
GTGGCCAGAGCATTCAGAGTATATTACAGCCCTGGCCCCAAGGACGAAGATGAGGACTACATAGTTGATCATACAATCAT
AATGTACTTGATTGGACCAGATGGTGAATTTCTAGATTATTTTGGCCAGAACAAGAAGAATGCAGAAATAGCTGGTTCAA
TTGCTGCACACATGAGGACCCACAGGAAAAAGAGCTAA

Library Parental gene expression (RPM)
SRP017611_brain 18 .82 RPM
SRP017611_kidney 82 .09 RPM
SRP017611_liver 25 .07 RPM
ERP005899_muscle 58 .28 RPM
ERP005899_liver 27 .68 RPM
SRP030211_testis 24 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000325 ortholog_one2one 1 retrogene
retro_amel_67,
Choloepus hoffmanni ENSCHOG00000007572 ortholog_one2one 7 retrogenes
retro_chof_2118, retro_chof_2547, retro_chof_2648, retro_chof_447, retro_chof_516, retro_chof_68, retro_chof_827,
Danio rerio ENSDARG00000067593 ortholog_one2one 1 retrogene
retro_drer_14,
Equus caballus ENSECAG00000025151 ortholog_one2one 1 retrogene
retro_ecab_50,
Erinaceus europaeus ENSEEUG00000011060 ortholog_one2one 1 retrogene
retro_eeur_4,
Felis catus ENSFCAG00000003959 ortholog_one2one 1 retrogene
retro_fcat_36,
Homo sapiens ENSG00000133028 ortholog_one2one 1 retrogene
retro_hsap_1112,
Gallus gallus ENSGALG00000013382 ortholog_one2one 1 retrogene
retro_ggal_14,
Loxodonta africana ENSLAFG00000005056 ortholog_one2one 1 retrogene
retro_lafr_567,
Oreochromis niloticus ENSONIG00000009584 ortholog_one2one 1 retrogene
retro_onil_50,
Oryzias latipes ENSORLG00000001047 ortholog_one2one 1 retrogene
retro_olat_14,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_393 74.60 60.66
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Download FASTA sequences of all ENSBTAG00000021780 retrocopies