RetrogeneDB ID: | retro_chof_68 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | GeneScaffold_1162:114770..115437(+) | ||
Located in intron of: | ENSCHOG00000010116 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SCO1 | ||
Ensembl ID: | ENSCHOG00000007572 | ||
Aliases: | None | ||
Description: | SCO1 cytochrome c oxidase assembly protein [Source:HGNC Symbol;Acc:10603] |
Percent Identity: | 66.81 % |
Parental protein coverage: | 73.77 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAGLLVVLGRVVRLPDGRLWRFLCRGVERWGPAEATARASPRQLCVRREEAWRGSGLAGSCLGSRALGTA |
M.GLL...G.V...PDG.LW.FL..G...WG.A.AT.R..P.Q.C...EEAWR.SGLAGSCLG...L.T. | |
Retrocopy | MVGLLLAPGWVIQPPDGQLWCFLSHGLGLWGLAGATTRTWPKQFCMW*EEAWRASGLAGSCLGIWPLSTV |
Parental | MPPPPGSSGPESKGL-RDPTRPSQPGPVSWKSLALTFAVGGALLAGMKYFKKEKAEKLEKERQRSLGKPL |
.P..PGSSGP..KGL.RDPT.PSQP..VSWKS...T.A.GG.LLAGMKYFKKEK.EK..KE.QRSLGK.. | |
Retrocopy | VPSFPGSSGPRLKGL>RDPTLPSQPRSVSWKS---TIAFGGTLLAGMKYFKKEKTEKV*KEQQRSLGKTS |
Parental | LGGPFSLTTHIGEPKTDKDYLGQWVLIYFGFTHCPDICPEELEKMIQVVDEIDSIPSLPNLTPLFITIDP |
L.GPFSLT.HIG.PK.DKDYL.QW.LIYFGFTHCPDICPE.LEK.IQV.DEIDSIPSL.NLT.LFITIDP | |
Retrocopy | LRGPFSLTIHIGKPKPDKDYLAQWILIYFGFTHCPDICPEKLEKSIQVMDEIDSIPSLLNLTLLFITIDP |
Parental | ERDTKEAIATYVKEFS |
.R.TK.........F. | |
Retrocopy | QRGTKSNLCNFKFNFN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000325 | 1 retrocopy | |
Bos taurus | ENSBTAG00000021780 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007572 | 7 retrocopies |
retro_chof_2118, retro_chof_2547, retro_chof_2648, retro_chof_447, retro_chof_516, retro_chof_68 , retro_chof_827,
|
Danio rerio | ENSDARG00000067593 | 1 retrocopy | |
Equus caballus | ENSECAG00000025151 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000011060 | 1 retrocopy | |
Felis catus | ENSFCAG00000003959 | 1 retrocopy | |
Homo sapiens | ENSG00000133028 | 1 retrocopy | |
Gallus gallus | ENSGALG00000013382 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000005056 | 1 retrocopy | |
Oreochromis niloticus | ENSONIG00000009584 | 1 retrocopy | |
Oryzias latipes | ENSORLG00000001047 | 1 retrocopy |