RetrogeneDB ID: | retro_drer_14 | ||
Retrocopylocation | Organism: | Zebrafish (Danio rerio) | |
Coordinates: | 4:17521938..17522805(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSDARG00000045555 | |
Aliases: | sco2, si:dkey-202b22.3 | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SCO1 | ||
Ensembl ID: | ENSDARG00000067593 | ||
Aliases: | None | ||
Description: | SCO1 cytochrome c oxidase assembly protein [Source:HGNC Symbol;Acc:10603] |
Percent Identity: | 52.26 % |
Parental protein coverage: | 62.26 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LAVTFALGGGLLLAMKYFKREKEELFEKERTKSIGKPALG-GPFSLLDHNNKPSRSEDFLGRWLLIYFGF |
L.VT...GGG......Y...EKE......R.....K.ALG.G.F.LLDH........DFLG.W.L.YFGF | |
Retrocopy | LVVTLLFGGGIIGTWWYVHQEKEKRIQMQRLEQLRKVALGQGDFHLLDHTGQRRTKRDFLGHWVLLYFGF |
Parental | THCPDICPDELEKMIEAVDEIDNIDTLPDVTPLLISIDPERDTPEALAAYVKDFSPKLIGLTGTTAQIEQ |
THCPDICPDELEK....V...D....LP.V.PL.I..DPERD...A.A.YVKDF.P.L.GLTG......Q | |
Retrocopy | THCPDICPDELEKLTSVVHILDKDPSLPSVQPLFITVDPERDDVSAMARYVKDFHPRLVGLTGSAEEVKQ |
Parental | VSRAYRVYYSQGPKDEDNDYIVDHTIIMYLVGPDGQFLEYYGQNKKSSEIASSIASYMR |
..R..RVY.S.GPKDED.DYIVDH.I..YLV.PDG.F..YY...K....IA.SI...M. | |
Retrocopy | AGRDFRVYASNGPKDEDGDYIVDHSIVIYLVNPDGLFIDYYNRMKNDTQIAESIRNHMK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000325 | 1 retrocopy | |
Bos taurus | ENSBTAG00000021780 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007572 | 7 retrocopies | |
Danio rerio | ENSDARG00000067593 | 1 retrocopy |
retro_drer_14 ,
|
Equus caballus | ENSECAG00000025151 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000011060 | 1 retrocopy | |
Felis catus | ENSFCAG00000003959 | 1 retrocopy | |
Homo sapiens | ENSG00000133028 | 1 retrocopy | |
Gallus gallus | ENSGALG00000013382 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000005056 | 1 retrocopy | |
Oreochromis niloticus | ENSONIG00000009584 | 1 retrocopy | |
Oryzias latipes | ENSORLG00000001047 | 1 retrocopy |