RetrogeneDB ID: | retro_chof_827 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_15266:1974..2885(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SCO1 | ||
Ensembl ID: | ENSCHOG00000007572 | ||
Aliases: | None | ||
Description: | SCO1 cytochrome c oxidase assembly protein [Source:HGNC Symbol;Acc:10603] |
Percent Identity: | 83.17 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MAGLLVVLGRVVRLPDGRLWRFLCRGVERWGPAEATARASPRQLCVRREEAWRGSGLAGSCLGSR-ALGT |
.AG.LVV.GRVVR.P.G.LWR.L.RG.....PAEAT.....RQLCVRR.EAWRGSGLAGSCLGSR..L.. | |
Retrocopy | IAGVLVVPGRVVRPPEGHLWRVLRRGAQLCSPAEATVSVCWRQLCVRRAEAWRGSGLAGSCLGSR<GLSA |
Parental | AMPPP-PGSSGP-ESKGLRDPTRPSQPG-PVSWKSLALTFAVGGALLAGMKYFKKEKAEKLEKERQRSLG |
AM.PP..G..GP..S.G.RDPT.PSQP..PVS.KSLA.TFA.GGALLAGMK.FKKEKAEKLEKERQR.LG | |
Retrocopy | AMLPP<RGHQGP<RSTGCRDPTHPSQPS<PVSRKSLAFTFAIGGALLAGMK*FKKEKAEKLEKERQRNLG |
Parental | KPLLGGPFSLTTHIGEPKTDKDYLGQWVLIYFGFTHCPDICPEELEKMIQVVDEIDSIPSLPNLTPLFIT |
K.LLGGPFSLTTHIGEP.TDKDYLG.WVLIYFGFTHCPDICPEELEKMIQV.DEIDSIPSLPNLTPLFIT | |
Retrocopy | KSLLGGPFSLTTHIGEPETDKDYLGRWVLIYFGFTHCPDICPEELEKMIQVLDEIDSIPSLPNLTPLFIT |
Parental | IDPERDTKEAIATYVKEFSPKLIGLTGTKEEIDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGE |
IDPERDTKEAIATYVKEFSPKL.G.TGTKEEIDQVA.AYRVYYSPG.KDEDEDYIVDHTIIMYLIGPDGE | |
Retrocopy | IDPERDTKEAIATYVKEFSPKLTGFTGTKEEIDQVAQAYRVYYSPGSKDEDEDYIVDHTIIMYLIGPDGE |
Parental | FLDYFGQNKKNAEIAGAIAAHMREHRKKS |
.LDYFGQNKKNAEIAG.IAAH.REH.KKS | |
Retrocopy | LLDYFGQNKKNAEIAGSIAAHVREHQKKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000325 | 1 retrocopy | |
Bos taurus | ENSBTAG00000021780 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007572 | 7 retrocopies |
retro_chof_2118, retro_chof_2547, retro_chof_2648, retro_chof_447, retro_chof_516, retro_chof_68, retro_chof_827 ,
|
Danio rerio | ENSDARG00000067593 | 1 retrocopy | |
Equus caballus | ENSECAG00000025151 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000011060 | 1 retrocopy | |
Felis catus | ENSFCAG00000003959 | 1 retrocopy | |
Homo sapiens | ENSG00000133028 | 1 retrocopy | |
Gallus gallus | ENSGALG00000013382 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000005056 | 1 retrocopy | |
Oreochromis niloticus | ENSONIG00000009584 | 1 retrocopy | |
Oryzias latipes | ENSORLG00000001047 | 1 retrocopy |