Parental gene:

SCO1, ENSEEUG00000011060

Aliases:None
Description:SCO1 cytochrome c oxidase assembly protein [Source:HGNC Symbol;Acc:10603]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_3673:977..24934(-)


>ENSEEUG00000011060
ATGGCGGGCGTTCTGTTCGTAGGACTTGGCCGCCACCGGTGGCTTCCGGGGGTTAGTCTGTGGCGTCTTTGGCCTAGCCG
ACCCGGAGTAAGTGGCTCGGTGGACAGGCTCGCAGAGGTCTGGCCGAGGCAGCTGTGTGTGGAGGCGTGGCAGGCCTCGG
GGCGAGCGGGTTCCTGCCGGGCTTTCAGCACGAGGTTGCCGCCACCGCCGGGGTCCTCGGAGGCCAAGTCTAAGGATGGC
GGGGACCCTCGGCGCACCTCCAAGCCCGGGCCTGTTTCTTGGAAATCTCTAGCATTCACATTTGCTGTTGGAGGAGCTTT
GCTGGCTGGAATGAAATACTTCAAGAATGAAAAGACAAAATATCTGGAGAAGCAAAGGCAGCGAAGCATCGGGAGGCCTT
TACTTGGGGGACCATTTTCCCTTATAACTCATCTTGGAGATCCCAAAACTGATCAAGACTACCTGGGTCAGTGGGTTTTG
ATATATTTTGGTTTCACTCACTGCCCTGACATCTGCCCAGAAGAACTTGAAAAGATGATTCAAGTTGTGGATGAAATAGA
CAGCTGCTCAACTCTGCCAAACTTAACTCCACTTTTCATCACTATTGACCCGGAGAGGGACACAAAAGAAGCCATCGCAA
ATTATGTGAAAGACTTTTCTCCCAAACTGATTGGCTTGACTGGTACAAAAGAAGCAATTGATCAAGTGGCCCGAGCATAC
CGAGTGTATTATAGTCCTGGCCCCAAGGATGAAGATGAGGACTACATAGTGGATCATACAATAGTAATGTACTTGATTGG
ACCAGATGGTGGGTTTCTCGATTTTGGCCAGAACAAGAAGAAACGAGAAATAGCTGTAAATGCTGCGCACATGAGGCACA
GAAAAACATAG

Library Parental gene expression (RPM)
SRP017611_liver 18 .65 RPM
SRP017611_kidney 36 .95 RPM
SRP017611_brain 23 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000325 ortholog_one2one 1 retrogene
retro_amel_67,
Bos taurus ENSBTAG00000021780 ortholog_one2one 1 retrogene
retro_btau_393,
Choloepus hoffmanni ENSCHOG00000007572 ortholog_one2one 7 retrogenes
retro_chof_2118, retro_chof_2547, retro_chof_2648, retro_chof_447, retro_chof_516, retro_chof_68, retro_chof_827,
Danio rerio ENSDARG00000067593 ortholog_one2one 1 retrogene
retro_drer_14,
Equus caballus ENSECAG00000025151 ortholog_one2one 1 retrogene
retro_ecab_50,
Felis catus ENSFCAG00000003959 ortholog_one2one 1 retrogene
retro_fcat_36,
Homo sapiens ENSG00000133028 ortholog_one2one 1 retrogene
retro_hsap_1112,
Gallus gallus ENSGALG00000013382 ortholog_one2one 1 retrogene
retro_ggal_14,
Loxodonta africana ENSLAFG00000005056 ortholog_one2one 1 retrogene
retro_lafr_567,
Oreochromis niloticus ENSONIG00000009584 ortholog_one2one 1 retrogene
retro_onil_50,
Oryzias latipes ENSORLG00000001047 ortholog_one2one 1 retrogene
retro_olat_14,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_4 50.75 67.57
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Download FASTA sequences of all ENSEEUG00000011060 retrocopies