Parental gene:

C9H12orf49, ENSBTAG00000047139

Aliases:C9H12orf49, C12orf49
Description:UPF0454 protein C12orf49 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q17QN8]
Organism:Cow (Bos taurus)
Coordinates:17:60505859..60521906(+)


>ENSBTAG00000047139
ATGGTGAACCTGGCGGCTATGGTGTGGCGCCGGCTCCTGCGGAAGAGGTGGGTGCTCGCCCTGGTCTTCGGGCTCTCGCT
GGTCTACTTCCTCACCAGCACCTTCAAGCAGGAAGAAAGGGCAGTGAGAGATCGGAATCTCCTCCAGGTCCAAGATCACG
ATCAACCCATCCCATGGAAAGTACAGTTTAATTTGGGCAATAGTAGTCGGCCCAGCAACCAGTGCCGTAACTCCATTCAG
GGGAAACACCTCATCACAGATGAACTGGGTTACGTTTGTGAGAGGAGAGATTTGCTGGTGAACGGCTGCTGTAACGTCAA
CGTCCCTGGCACGAAGCAGTACTGCTGTGACGGCTGCTTGTCCAGTGGCTGCTGTAGCGCCTACGAGTACTGTGTCTCCT
GCTGCCTGCAGCCCAACAAGCAACTCCTCCTGGAGCGCTTCCTCAACCGGGCAGCTGTGGCATTCCAGAACCTCTTCATG
GCAGTTGAAGATCACTTTGAATTGTGTTTGGCTAAATGCAGAACCTCATCCCAGAGCGTGCAGCACGAGAACACCTATAG
GGATCCCATAGCAAAGTACTGCTACGGAGAGAGCCCTCCCGAGCTCTTCCCCGCGTGA

Library Parental gene expression (RPM)
ERP005899_liver 6 .56 RPM
ERP005899_muscle 21 .49 RPM
SRP017611_brain 20 .01 RPM
SRP017611_kidney 15 .06 RPM
SRP017611_liver 13 .29 RPM
SRP030211_testis 24 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012481 ortholog_one2one 2 retrogenes
retro_amel_1518, retro_amel_1578,
Callithrix jacchus ENSCJAG00000009570 ortholog_one2one 1 retrogene
retro_cjac_1471,
Dasypus novemcinctus ENSDNOG00000001294 ortholog_one2one 9 retrogenes
retro_dnov_126, retro_dnov_1532, retro_dnov_1609, retro_dnov_1622, retro_dnov_1739, retro_dnov_2042, retro_dnov_2185, retro_dnov_2285, retro_dnov_232,
Echinops telfairi ENSETEG00000016892 ortholog_one2one 3 retrogenes
retro_etel_1064, retro_etel_1377, retro_etel_410,
Homo sapiens ENSG00000111412 ortholog_one2one 1 retrogene
retro_hsap_4758,
Gorilla gorilla ENSGGOG00000015690 ortholog_one2one 2 retrogenes
retro_ggor_2963, retro_ggor_508,
Myotis lucifugus ENSMLUG00000011912 ortholog_one2many 1 retrogene
retro_mluc_166,
Macaca mulatta ENSMMUG00000018247 ortholog_one2one 2 retrogenes
retro_mmul_2376, retro_mmul_2537,
Pan troglodytes ENSPTRG00000005500 ortholog_one2one 1 retrogene
retro_ptro_2798,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1667 77.59 55.61
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Download FASTA sequences of all ENSBTAG00000047139 retrocopies