Parental gene:

C12orf49, ENSPTRG00000005500

Aliases:None
Description:chromosome 12 open reading frame 49 [Source:HGNC Symbol;Acc:26128]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:12:117245799..117268779(-)


>ENSPTRG00000005500
ATGGTGAACCTGGCGGCCATGGTGTGGCGCCGGCTTCTGCGGAAGAGGTGGGTGCTCGCCCTGGTCTTCGGGCTGTCGCT
CGTCTACTTCCTCAGCAGCACCTTCAAGCAGGAGGAGAGGGCAGTGAGAGATAGGAATCTCCTCCAGGTTCATGACCATA
ATCAGCCCATCCCGTGGAAAGTGCAGTTTAACTTGGGCAATAGCAGTCGTCCGAGCAATCAGTGCCGCAACTCCATTCAA
GGGAAGCACCTCATCACGGATGAACTCGGCTACGTTTGCGAGAGGAAGGATTTGCTGGTAAATGGCTGCTGTAACGTCAA
CGTCCCTAGCACGAAGCAGTACTGCTGTGATGGCTGCTGGCCCAACGGCTGCTGCAGCGCCTATGAGTACTGTGTCTCCT
GCTGCCTGCAGCCCAACAAGCAACTTCTCCTGGAGCGCTTCCTCAACCGGGCAGCCGTGGCATTCCAGAACCTCTTCATG
GCAGTCGAAGATCACTTTGAGTTGTGCCTGGCCAAATGCAGGACCTCATCTCAGAGCGTGCAGCATGAGAACACCTACCG
GGACCCCGTAGCAAAGTATTGCTATGGAGAAAGCCCGCCCGAGCTCTTCCCCGCTTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 41 .49 RPM
SRP007412_cerebellum 30 .79 RPM
SRP007412_heart 7 .02 RPM
SRP007412_kidney 35 .62 RPM
SRP007412_liver 15 .29 RPM
SRP007412_testis 19 .39 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012481 ortholog_one2one 2 retrogenes
retro_amel_1518, retro_amel_1578,
Bos taurus ENSBTAG00000047139 ortholog_one2one 1 retrogene
retro_btau_1667,
Callithrix jacchus ENSCJAG00000009570 ortholog_one2one 1 retrogene
retro_cjac_1471,
Dasypus novemcinctus ENSDNOG00000001294 ortholog_one2one 9 retrogenes
retro_dnov_126, retro_dnov_1532, retro_dnov_1609, retro_dnov_1622, retro_dnov_1739, retro_dnov_2042, retro_dnov_2185, retro_dnov_2285, retro_dnov_232,
Echinops telfairi ENSETEG00000016892 ortholog_one2one 3 retrogenes
retro_etel_1064, retro_etel_1377, retro_etel_410,
Homo sapiens ENSG00000111412 ortholog_one2one 1 retrogene
retro_hsap_4758,
Gorilla gorilla ENSGGOG00000015690 ortholog_one2one 2 retrogenes
retro_ggor_2963, retro_ggor_508,
Myotis lucifugus ENSMLUG00000011912 ortholog_one2many 1 retrogene
retro_mluc_166,
Macaca mulatta ENSMMUG00000018247 ortholog_one2one 2 retrogenes
retro_mmul_2376, retro_mmul_2537,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2798 66.04 51.22
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Download FASTA sequences of all ENSPTRG00000005500 retrocopies