RetrogeneDB ID: | retro_hsap_4758 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | X:129779696..129780068(+) | ||
Located in intron of: | ENSG00000165675 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000238188 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C12orf49 | ||
Ensembl ID: | ENSG00000111412 | ||
Aliases: | None | ||
Description: | chromosome 12 open reading frame 49 [Source:HGNC Symbol;Acc:26128] |
Percent Identity: | 91.13 % |
Parental protein coverage: | 60.49 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MVNLAAMVWRRLLRKRWVLALVFGLSLVYFLSSTFKQEERAVRDRNLLQVHDHNQPIPWKVQFNLGNSSR |
MVNLAAMVWRRLLRKRWVL.LVFGLSLVYFLS.T..QEERAVR.RN.LQV.DH.QPIPWKV.FNLGNSSR | |
Retrocopy | MVNLAAMVWRRLLRKRWVLVLVFGLSLVYFLSTTSRQEERAVRERNPLQVQDHDQPIPWKV*FNLGNSSR |
Parental | PSNQCRNSIQGKHLITDELGYVCERKDLLVNGCCNVNVPSTKQYCCDGCWPNGC |
PSNQC.NSIQGKHLITDEL.YVCERKDLLVNGCCNVNVPSTKQYCCDGCWPNGC | |
Retrocopy | PSNQCHNSIQGKHLITDELSYVCERKDLLVNGCCNVNVPSTKQYCCDGCWPNGC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 13 .87 RPM |
bodymap2_adrenal | 0 .00 RPM | 13 .14 RPM |
bodymap2_brain | 0 .02 RPM | 32 .49 RPM |
bodymap2_breast | 0 .00 RPM | 13 .62 RPM |
bodymap2_colon | 0 .00 RPM | 8 .82 RPM |
bodymap2_heart | 0 .00 RPM | 6 .63 RPM |
bodymap2_kidney | 0 .00 RPM | 23 .74 RPM |
bodymap2_liver | 0 .00 RPM | 9 .23 RPM |
bodymap2_lung | 0 .00 RPM | 36 .04 RPM |
bodymap2_lymph_node | 0 .00 RPM | 18 .47 RPM |
bodymap2_ovary | 0 .00 RPM | 12 .61 RPM |
bodymap2_prostate | 0 .10 RPM | 9 .11 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 2 .42 RPM |
bodymap2_testis | 0 .00 RPM | 15 .74 RPM |
bodymap2_thyroid | 0 .00 RPM | 139 .71 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 44 .65 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_2963 |
Macaca mulatta | retro_mmul_2537 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012481 | 2 retrocopies | |
Bos taurus | ENSBTAG00000047139 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009570 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000001294 | 9 retrocopies | |
Echinops telfairi | ENSETEG00000016892 | 3 retrocopies | |
Homo sapiens | ENSG00000111412 | 1 retrocopy |
retro_hsap_4758 ,
|
Gorilla gorilla | ENSGGOG00000015690 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000011912 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018247 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000005500 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .02 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .03 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .03 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .03 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .05 RPM |
YRI_NA19214 | 0 .05 RPM |
YRI_NA19223 | 0 .04 RPM |