RetrogeneDB ID: retro_mluc_166

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430082:6473..7058(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000024317
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000011912
• Aliases: None
• Description: None

Sequence

>retro_mluc_166
ATGGTGAACCTGGCGGCCATGGTGTGGCGCCGGCTCCTGCGGAAGCGGTGGGTGCTCGCCCTGGTCTTCGGGCTCTCGCT
CGTCTACTTCCTCACCAGCACCTTCAAGCAGGAGGAGAGGGCAGTGAGAGATCGGAATCTCCTCCAGGTTCAAGACCATG
ATCAGCCCATTCTGTGGAAAGTGCAGTTTAACTTGGGCAATAGCAGTCGGCCCAGCAACCAGTGCCGGAACTCCATCCAA
GGGAAGCACCTCATCACCGATGAACTAGGATACGTTTGTGAAAGGAAGGACTTGCTGGTGAATGGCTGCTGTAATGTCAA
CGTCCCGGGCACCAAGCAGTACTGCTGTGATGGCTGCTTGACCAACGGCTGCTGCAGCGCTTACGAGCACTGCGTTTCCT
GCTGCCTGCAGCCCAACAAGCAACTTCTCCTGGAGTGCTTCCTCAACCGGGCAGCTGTGGCCTTCCAGAACCTCTTCATG
GCAGTGGAGGATCACTTTGAATTGTGTTTGGCTAAATGCAGGACCTCATCCCAGAGTGTGCAGCACGAGAACACCTATAG
GGATCCCATAGCAAAGTATTGCTAA

Alignment

ORF - retro_mluc_166 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.48 %
• Parental protein coverage: 94.63 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MVNLAAMVWRRLLRKRWVLALVFGLSLVYFLTSTFKQEERAVRDRNLLQVQDHDQPILWKVQFNLGNSSR
          MVNLAAMVWRRLLRKRWVLALVFGLSLVYFLTSTFKQEERAVRDRNLLQVQDHDQPILWKVQFNLGNSSR
Retrocopy MVNLAAMVWRRLLRKRWVLALVFGLSLVYFLTSTFKQEERAVRDRNLLQVQDHDQPILWKVQFNLGNSSR

Parental  PSNQCRNSIQGKHLITDELGYVCERKDLLVNGCCNVNVPGTKQYCCDGCLTNGCCSAYEHCVSCCLQPNK
          PSNQCRNSIQGKHLITDELGYVCERKDLLVNGCCNVNVPGTKQYCCDGCLTNGCCSAYEHCVSCCLQPNK
Retrocopy PSNQCRNSIQGKHLITDELGYVCERKDLLVNGCCNVNVPGTKQYCCDGCLTNGCCSAYEHCVSCCLQPNK

Parental  QLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQHENTYRDPIAKYC
          QLLLE.FLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQHENTYRDPIAKYC
Retrocopy QLLLECFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQHENTYRDPIAKYC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_166 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 10 parental genes, and 23 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000012481	2 retrocopies	retro_amel_1518, retro_amel_1578,
Bos taurus	ENSBTAG00000047139	1 retrocopy	retro_btau_1667,
Callithrix jacchus	ENSCJAG00000009570	1 retrocopy	retro_cjac_1471,
Dasypus novemcinctus	ENSDNOG00000001294	9 retrocopies	retro_dnov_126, retro_dnov_1532, retro_dnov_1609, retro_dnov_1622, retro_dnov_1739, retro_dnov_2042, retro_dnov_2185, retro_dnov_2285, retro_dnov_232,
Echinops telfairi	ENSETEG00000016892	3 retrocopies	retro_etel_1064, retro_etel_1377, retro_etel_410,
Homo sapiens	ENSG00000111412	1 retrocopy	retro_hsap_4758,
Gorilla gorilla	ENSGGOG00000015690	2 retrocopies	retro_ggor_2963, retro_ggor_508,
Myotis lucifugus	ENSMLUG00000011912	1 retrocopy	retro_mluc_166 ,
Macaca mulatta	ENSMMUG00000018247	2 retrocopies	retro_mmul_2376, retro_mmul_2537,
Pan troglodytes	ENSPTRG00000005500	1 retrocopy	retro_ptro_2798,