Parental gene: | TOX4, ENSCAFG00000005647 |
| Aliases: | None |
| Description: | TOX high mobility group box family member 4 [Source:HGNC Symbol;Acc:20161] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 15:18512522..18527624(+) |
>ENSCAFG00000005647
TTCCAGTTTCCCGGAGGAAATGACAATTACCTGACGATCACTGGGCCCTCGCACCCCTTCCTGTCGGGGGCCGAGACATT
CCATACTCCGAGCTTGGGAGATGAGGAATTTGAAATCCCACCTATCTCCTTGGATTCTGACCCCTCGCTGGCTGTTTCGG
ATGTGGTCGGCCACTTTGATGACCTAGCAGACCCCTCCTCCTCCCAGGATGGCAGCTTTTCAGCCCAGTATGGGGTCCAG
ACATTGGACATGCCTGTGGGCATGACCCATGGCTTGATGGAGCAGGGCGGGGGGCTCCTGAGTGGGGGCTTGACCATGGA
CTTGGACCATTCTATAGGAACTCAGTATAGTGCCAACCCACCTGTTACAATTGATGTACCAATGGCAGACATGACATCTG
GCTTGATGGGGCATAGCCAGTTGACCACCATTGATCAGTCAGAACTGAGTTCTCAACTTGGTTTGAGCTTAGGGGGTGGC
ACCATCCTGCCACCTGCCCAGTCACCTGAGGATCGTCTTTCAACCACCCCTTCACCTACTAGTTCACTTCATGAGGATGG
TGTTGAGGATTTCCGGAGGCAAGTTCCCAGCCAGAAGACCGTTGTGGTGGAAGCAGGAAAAAAGCAGAAGGCCCCAAAGA
AGAGAAAAAAGAAAGATCCTAATGAACCCCAGAAGCCAGTTTCAGCATATGCTTTATTCTTTCGTGATACACAGGCTGCC
ATCAAGGGACAGAATCCCAATGCCACTTTTGGGGAGGTTTCAAAAATTGTGGCCTCCATGTGGGATAGTCTTGGAGAGGA
GCAAAAACAGGTGTATAAGAGGAAAACTGAAGCTGCCAAGAAAGAGTATCTGAAGGCTCTGGCTGCATATAAAGACAATC
AAGAGTGTCAGGCCACTGTGGAAACAGTAGAATTGGATCCAGTGCCACCGTCACAGACGCCTTCTCCACCTCCTATGGCT
ACTGTTGACCCAGCATCTCCAGCACCAGCCACAACAGAGCCCCCTGCCCTGTCCCCTTCCATTGTTGTTAACTCCACTCT
TTCCTCGTATGTGGCAAACCAGGCATCTTCTGGGGCCGGAGGTCAGCCCAATATCACCAAGTTGATTATTACCAAACAGA
TGTTACCCTCTTCTATTACTATGTCTCAAGGAGGGATGGTTACTGTTATCCCAGCCACAGTGGTGACCTCCCGGGGGATC
CAACTAGGCCAAACCAGTACAGCCACCATCCAGCCCAGTCAGCAAGCCCAAATTGTCACTCGCTCAGTGTTGCAGGCAGC
GGCAGCGGCAGCTGCTTCTATGCAACTGCCTCCACCTCGACTACAACCCCCTCCACTGCAACAGATGCCTCAGCCCCCCA
CTCAGCAGCAAGTGACCATCCTTCAGCAGCCTCCCCCACTTCAGGCCATGCAACAGCCTCCACCTCAGAAAGTCCGAATC
AATTTACAGCAACAGCCACCTCCTCTGCAGATCAAAATTGTACCTCCACCCACTCTGAAAATGCAGACAACCTTAGTCCC
ACCAACTGTGGAAAGTAGTCCTGAGCGGCCTGTGAACAACAGCCCTGAGGCCCACACAGTAGAGGAAACCTCTCCTGAGA
CGATCTGTGAGATGATCACAGATGTAGTTCCTGAGGTTGAATCTCCTTCTCAAATGGATGTTGAATTGGTGAGTGGGTCT
CCTGTGACCCTCTCACCCCAGCCTCGATGTGTGAGGTCCGGCTGTGAGAACCCTCCGGTTGTGAGTAAGGACTGGGACAA
TGAGTACTGCAGCAATGAATGTGTGGTGAAGCACTGCAGGGATGTCTTCTTGGCCTGGGTGGCTTCTAGAAATTCAAACA
CAGTGGTGTTTGTGAAG
TTCCAGTTTCCCGGAGGAAATGACAATTACCTGACGATCACTGGGCCCTCGCACCCCTTCCTGTCGGGGGCCGAGACATT
CCATACTCCGAGCTTGGGAGATGAGGAATTTGAAATCCCACCTATCTCCTTGGATTCTGACCCCTCGCTGGCTGTTTCGG
ATGTGGTCGGCCACTTTGATGACCTAGCAGACCCCTCCTCCTCCCAGGATGGCAGCTTTTCAGCCCAGTATGGGGTCCAG
ACATTGGACATGCCTGTGGGCATGACCCATGGCTTGATGGAGCAGGGCGGGGGGCTCCTGAGTGGGGGCTTGACCATGGA
CTTGGACCATTCTATAGGAACTCAGTATAGTGCCAACCCACCTGTTACAATTGATGTACCAATGGCAGACATGACATCTG
GCTTGATGGGGCATAGCCAGTTGACCACCATTGATCAGTCAGAACTGAGTTCTCAACTTGGTTTGAGCTTAGGGGGTGGC
ACCATCCTGCCACCTGCCCAGTCACCTGAGGATCGTCTTTCAACCACCCCTTCACCTACTAGTTCACTTCATGAGGATGG
TGTTGAGGATTTCCGGAGGCAAGTTCCCAGCCAGAAGACCGTTGTGGTGGAAGCAGGAAAAAAGCAGAAGGCCCCAAAGA
AGAGAAAAAAGAAAGATCCTAATGAACCCCAGAAGCCAGTTTCAGCATATGCTTTATTCTTTCGTGATACACAGGCTGCC
ATCAAGGGACAGAATCCCAATGCCACTTTTGGGGAGGTTTCAAAAATTGTGGCCTCCATGTGGGATAGTCTTGGAGAGGA
GCAAAAACAGGTGTATAAGAGGAAAACTGAAGCTGCCAAGAAAGAGTATCTGAAGGCTCTGGCTGCATATAAAGACAATC
AAGAGTGTCAGGCCACTGTGGAAACAGTAGAATTGGATCCAGTGCCACCGTCACAGACGCCTTCTCCACCTCCTATGGCT
ACTGTTGACCCAGCATCTCCAGCACCAGCCACAACAGAGCCCCCTGCCCTGTCCCCTTCCATTGTTGTTAACTCCACTCT
TTCCTCGTATGTGGCAAACCAGGCATCTTCTGGGGCCGGAGGTCAGCCCAATATCACCAAGTTGATTATTACCAAACAGA
TGTTACCCTCTTCTATTACTATGTCTCAAGGAGGGATGGTTACTGTTATCCCAGCCACAGTGGTGACCTCCCGGGGGATC
CAACTAGGCCAAACCAGTACAGCCACCATCCAGCCCAGTCAGCAAGCCCAAATTGTCACTCGCTCAGTGTTGCAGGCAGC
GGCAGCGGCAGCTGCTTCTATGCAACTGCCTCCACCTCGACTACAACCCCCTCCACTGCAACAGATGCCTCAGCCCCCCA
CTCAGCAGCAAGTGACCATCCTTCAGCAGCCTCCCCCACTTCAGGCCATGCAACAGCCTCCACCTCAGAAAGTCCGAATC
AATTTACAGCAACAGCCACCTCCTCTGCAGATCAAAATTGTACCTCCACCCACTCTGAAAATGCAGACAACCTTAGTCCC
ACCAACTGTGGAAAGTAGTCCTGAGCGGCCTGTGAACAACAGCCCTGAGGCCCACACAGTAGAGGAAACCTCTCCTGAGA
CGATCTGTGAGATGATCACAGATGTAGTTCCTGAGGTTGAATCTCCTTCTCAAATGGATGTTGAATTGGTGAGTGGGTCT
CCTGTGACCCTCTCACCCCAGCCTCGATGTGTGAGGTCCGGCTGTGAGAACCCTCCGGTTGTGAGTAAGGACTGGGACAA
TGAGTACTGCAGCAATGAATGTGTGGTGAAGCACTGCAGGGATGTCTTCTTGGCCTGGGTGGCTTCTAGAAATTCAAACA
CAGTGGTGTTTGTGAAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 52 .08 RPM |
| SRP017611_kidney | 42 .92 RPM |
| SRP017611_liver | 24 .15 RPM |
| SRP012049_cerebellum | 65 .77 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000006261 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000000714 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000092203 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000010501 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000000181 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000016831 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000014556 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000005598 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000006126 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000029203 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_1625 | 82.17 | 56.70 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_1698 | 90.22 | 97.09 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000005647 retrocopies