Parental gene:

TOX4, ENSSSCG00000029203

Aliases:None
Description:TOX high mobility group box family member 4 [Source:HGNC Symbol;Acc:20161]
Organism:Pig (Sus scrofa)
Coordinates:7:83022126..83041172(-)


>ENSSSCG00000029203
ATGGAGTTTCCCGGAGGAAGTGACAATTACCTGACGATCACTGGACCCTCGCACCCCTTCCTGTCAGGGGCCGAGACGTT
CCATACACCAAGCTTAGGCGATGAGGAGTTTGAAATCCCACCCATCTCCTTGGATTCTGATCCCTCACTGGCTGTCTCGG
ATGTGGTTGGACACTTTGATGACCTGGCAGACCCTTCCTCCTCTCAGGATGGCAGCTTTTCAGCCCAATATGGGGTCCAG
ACATTGGACATGCCTGTGGGCATGACCCATGGCTTGATGGAGCAGGGCGGGGGGCTCCTGAGTGGGGGCTTGACCATGGA
CTTGGATCATTCTATAGGAACTCAGTATAGCGCCAACCCACCTGTTACAATTGATGTACCAATGACAGACATGACATCTG
GCTTGATGGGGCATAGCCAGTTGACCACCATTGATCAGTCAGAACTGAGTTCTCAACTTGGTTTGAGCTTAGGGGGTGGC
ACCATCCTGCCACCTGCCCAGTCACCTGAGGATCGTCTTTCAACCACCCCTTCACCTACTAGTTCACTTCATGAGGATGG
TGTTGAGGAATTCCGGAGGCAACTTCCCAGCCAGAAGACAGTTGTGGTGGAAGCAGGGAAAAAGCAGAAGGCTCCAAAGA
AGAGAAAAAAGAAAGATCCTAATGAACCTCAAAAACCAGTTTCAGCATATGCTTTGTTCTTTCGTGACACACAAGCTGCC
ATCAAGGGACAGAATCCCAATGCCACTTTTGGGGAGGTTTCAAAAATTGTGGCCTCCATGTGGGACAGTCTTGGAGAGGA
GCAAAAGCAGGTGTACAAGAGGAAAACTGAAGCTGCCAAGAAAGAGTATCTAAAGGCTCTGGCTGCTTATAAAGATAATC
AGGAGTGTCAGGCCACTGTAGAAACAGTGGAATTGGATCCAGCACCACCATCGCAGACTCCTTCTCCACCTCCTGTGGCT
ACAACTGCTGACCCAGCATCTCCAGCACCAGCCACAACAGAGCCTCCGGCCCTGTCTCCTTCCATTGTTGTTAATTCCAC
TCTTTCATCCTATGTGACAAACCAAGCATCTTCTGGAGCTGGGGGTCAGCCCAATATTACCAAGTTGATTATTACCAAAC
AGATGTTGCCTTCTTCTATTACTATGTCTCAAGGAGGGATGGTTACCGTTATCCCAGCAACAGTGGTGACCTCCCGGGGG
CTCCAACTAGGCCAAACCAGTACAGCTACTATCCAGCCTAGTCAACAAGCCCAGATTGTCACTCGGTCAGTGTTGCAGGC
AGCAGCAGCAGCAGCAGCTTCTATGCAACTGCCTCCACCCCGACTACAACCCCCTCCATTGCAACAGATGCCTCAGCCCC
CCACTCAGCAACAAGTGACCATTCTGCAGCAGCCTCCCCCACTCCAGGCCATGCAACAGCCTCCACCACAGAAATTTCGA
ATCAATTTACAGCAACAGCCACCTCCGCTGCAGGTCAAGATTGTGCCTCCACCCACTCTGAAAATGCAGACTACCTTAGT
TCCACCACCTGTAGAAAATAGTCCTGAGCAGCCTATGAACAGCAGCCCTGAGGCCCATACTGTGGAGGAAACCTCTCCTG
AGACAATCTGTGAGATGATCACAGATGTAGTTCCTGAGGTTGAGTCTCCTCCCCAAATGGATGTTGAATTGGTGGATGAG
TCTCCTGTGACGCTCTCACCCCAGCCTCGATGTGTGAGGTCCGGCTGTGAGAACCCTCCTGTTGTGAGTAAAGACTGGGA
CAACGAGTACTGCAGCAATGAGTGCGTGGTGAAGCACTGCAGGGATGTCTTCTTGGCCTGGGTAGCCTCTAGAAATTCAA
ACACAGTGGTGTTTGTGAAATAG

Library Parental gene expression (RPM)
SRP014902_placenta 59 .99 RPM
SRP014902_testis 35 .93 RPM
SRP018288_heart 28 .34 RPM
SRP018288_kidney 37 .04 RPM
SRP018288_liver 27 .82 RPM
SRP018288_lung 89 .61 RPM
SRP018856_adipose 92 .06 RPM
SRP035408_brain 13 .09 RPM
SRP035408_liver 12 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006261 ortholog_one2one 1 retrogene
retro_amel_858,
Canis familiaris ENSCAFG00000005647 ortholog_one2one 2 retrogenes
retro_cfam_1625, retro_cfam_1698,
Choloepus hoffmanni ENSCHOG00000000714 ortholog_one2one 2 retrogenes
retro_chof_2239, retro_chof_631,
Homo sapiens ENSG00000092203 ortholog_one2one 1 retrogene
retro_hsap_2970,
Macropus eugenii ENSMEUG00000010501 ortholog_one2one 1 retrogene
retro_meug_1384,
Mustela putorius furo ENSMPUG00000000181 ortholog_one2one 1 retrogene
retro_mputfur_718,
Mus musculus ENSMUSG00000016831 ortholog_one2many 1 retrogene
retro_mmus_11,
Nomascus leucogenys ENSNLEG00000014556 ortholog_one2one 1 retrogene
retro_nleu_2027,
Pongo abelii ENSPPYG00000005598 ortholog_one2one 1 retrogene
retro_pabe_2463,
Pan troglodytes ENSPTRG00000006126 ortholog_one2one 1 retrogene
retro_ptro_2008,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_361 88.59 82.90
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Download FASTA sequences of all ENSSSCG00000029203 retrocopies