Parental gene:

EIF3F, ENSCAFG00000006884

Aliases:None
Description:eukaryotic translation initiation factor 3, subunit F [Source:HGNC Symbol;Acc:3275]
Organism:Dog (Canis familiaris)
Coordinates:21:31518090..31525501(+)


>ENSCAFG00000006884
GCCGCCGCACCCACACCTTCTGACGCGCCAGCCTCTGCCTCAGACCCGAGGACTGCGGCGGCCACGACTGCGGCTCCGGG
CCAGACCCCGGCGTCTACGCCAGCCCCAGCGCAGACTCCGGCGCAGTCACTGCCGGGTCCTGCTCTCCCAGGCCCCTTCC
CCGGGGGCCGCGTGGTCCGGCTGCACCCGGTCATTTTGGCTTCCATCGTGGACAGCTACGAGCGACGCAACGAGGGCGCT
GCCCGAGTTATCGGGACCCTGCTGGGAACCGTTGACAAGCATTCAGTGGAGGTCACTAACTGCTTTTCAGTGCCACACAA
TGAGTCAGAAGATGAGGTGGCTGTTGACATGGAATTCGCTAAGAACATGTATGAATTGCACAAGAAAGTCTCTCCAAATG
AGCTCATCTTGGGCTGGTATGCTACAGGCCATGACATTACAGAGCACTCTGTGCTGATCCATGAGTACTACAGCCGAAAA
GCCCCCAACCCCATTCACCTCACTGTGGACACCAGCCTCCAGAATGGCCGCATGAGCATCAAGGCCTATGTCAGCACTTT
AATGGGTGTCCCTGGGAGGACCATGGGGGTGATGTTCACACCTCTAACAGTGAAATATGCGTATTATGACACTGAACGTA
TTGGAGTTGACCTGATCATGAAGACCTGTTTTAGCCCTAACCGGGTGATTGGACTCTCAAGCGACTTGCAGCAAGTAGGA
GGGGCATCGGCTCGCATCCAAGATGCCCTAAGCACGGTGTTGCAGTATGCAGAGGATGTGCTGTCTGGAAAGGTGTCAGC
TGACAATACTGTGGGCCGCTTCTTGATGAGTCTGGTTAACCAAGTACCCAAGATAGTTCCCGATGACTTTGAGACCATGC
TCAACAGCAACATCAATGACCTGCTGATGGTGACCTACCTGGCCAATCTCACGCAGTCACAGATTGCCCTCAATGAGAAA
CTTGTAAACCTGTGA

Library Parental gene expression (RPM)
SRP017611_brain 43 .43 RPM
SRP017611_kidney 92 .39 RPM
SRP017611_liver 64 .75 RPM
SRP012049_cerebellum 80 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000004861 ortholog_one2one 1 retrogene
retro_btau_527,
Canis familiaris ENSCAFG00000014814 within_species_paralog 1 retrogene
retro_cfam_1389,
Callithrix jacchus ENSCJAG00000011903 ortholog_one2one 1 retrogene
retro_cjac_1416,
Echinops telfairi ENSETEG00000002717 possible_ortholog 2 retrogenes
retro_etel_1583, retro_etel_35,
Myotis lucifugus ENSMLUG00000000825 possible_ortholog 1 retrogene
retro_mluc_2356,
Macaca mulatta ENSMMUG00000015010 ortholog_one2one 1 retrogene
retro_mmul_412,
Otolemur garnettii ENSOGAG00000003220 possible_ortholog 3 retrogenes
retro_ogar_3041, retro_ogar_859, retro_ogar_863,
Pongo abelii ENSPPYG00000003512 ortholog_one2one 1 retrogene
retro_pabe_175,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1339 68.25 76.54
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCAFG00000006884 retrocopies