Parental gene:

ENSCJAG00000011903

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:11:71377564..71388043(+)


>ENSCJAG00000011903
CTGAATGCCCTCGTTTCCGCTCCTGTCGCATTCTTTCTCGACAAGATGGCCACGCCGGCGGTATCACCAAGTGCTCCTCC
TGCCACGCCAGCTCCGGCCCCGGTGGCGGCCCCAGTCTCGGCCCCAACCTCAGTTCCAGCCCCAGCGCCAACGCCAGCAC
AAGCTGCGGCTCCGCCTTCCGCTGGGACTCCAGCCTCATCCTCAGACTCTGCGGCAGCAGCGGCTACGACTGCGGCTCCT
GGCCAGACTTCGGCCTCAGCGCAAGCTCCGGCGCAGACCCCAGCGCCCGCTCTGCCCGGTCCGGCTCTCCCAGGGCCCTT
CCCCGGCGGCCGCGTGGTCAGGCTGCACCCAGTCATTTTGGCCTCCATTGTGGACAGCTACGAGCGACGCAACGAGGGTG
CTGCCCGAGTTATCGGGACCCTGCTGGGAACGGTCGACAAACACTCAGTGGAGGTCACCAATTGCTTTTCAGTGCCGCAC
AATGAGTCAGAAGATGAAGTGGCTGTTGACATGGAATTTGCTAAGAACATGTATGAACTGCATAAAAAAGTTTCTCCAAA
TGAGCTCATCCTGGGCTGGTACGCTACAGGCCATGACATCACAGAGCACTCTGTGCTGATCCATGAGTACTACAGCCGGG
AGGCTCCCAACCCCATCCACCTCACTGTGGACACTAGTCTCCAGAACGGCCGCATGAGCATCAAAGCCTATGTCAGCACT
TTAATGGGTGTCCCCGGGAGGACCATGGGAGTGATGTTCACACCTCTGACAGTGAAATATGCATACTATGACACTGAACG
AATTGGAGTTGACCTGATCATGAAGACCTGCTTTAGTCCCAACCGAGTGATTGGACTCTCAAGTGACTTGCAGCAAGTAG
GAGGGGCATCAGCTCGCATCCAGGATGCCCTGAGCACGGTGTTGCAATACGCAGAGGATGTACTGTCTGGAAAGGTGTCA
GCTGACAATACTGTGGGCCGATTCCTGATGAGCCTGGTTAACCAAGTACCTAAAATAGTTCCTGATGACTTTGAGACCAT
GCTCAACAGCAACATCAATGACCTGCTGATGGTGACCTACCTGGCCAACCTCACACAGTCACAGATTGCCCTCAATGAGA
AACTCGTAAACCTGTGA

Library Parental gene expression (RPM)
SRP051959_colon 24 .25 RPM
SRP051959_heart 23 .05 RPM
SRP051959_kidney 23 .72 RPM
SRP051959_liver 20 .36 RPM
SRP051959_lung 23 .75 RPM
SRP051959_lymph_node 32 .30 RPM
SRP051959_skeletal_muscle 31 .21 RPM
SRP051959_spleen 29 .14 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000004861 ortholog_one2many 1 retrogene
retro_btau_527,
Canis familiaris ENSCAFG00000006884 ortholog_one2one 1 retrogene
retro_cfam_1339,
Callithrix jacchus ENSCJAG00000015129 within_species_paralog 2 retrogenes
retro_cjac_1520, retro_cjac_2910,
Erinaceus europaeus ENSEEUG00000001226 possible_ortholog 1 retrogene
retro_eeur_130,
Echinops telfairi ENSETEG00000002717 possible_ortholog 2 retrogenes
retro_etel_1583, retro_etel_35,
Homo sapiens ENSG00000175390 possible_ortholog 3 retrogenes
retro_hsap_2106, retro_hsap_2512, retro_hsap_4321,
Gorilla gorilla ENSGGOG00000011702 possible_ortholog 5 retrogenes
retro_ggor_1566, retro_ggor_1567, retro_ggor_1568, retro_ggor_1589, retro_ggor_1590,
Myotis lucifugus ENSMLUG00000000825 possible_ortholog 1 retrogene
retro_mluc_2356,
Macaca mulatta ENSMMUG00000015010 ortholog_one2one 1 retrogene
retro_mmul_412,
Oryctolagus cuniculus ENSOCUG00000004225 possible_ortholog 1 retrogene
retro_ocun_1488,
Otolemur garnettii ENSOGAG00000003220 possible_ortholog 3 retrogenes
retro_ogar_3041, retro_ogar_859, retro_ogar_863,
Pongo abelii ENSPPYG00000003512 ortholog_one2one 1 retrogene
retro_pabe_175,
Pan troglodytes ENSPTRG00000003326 possible_ortholog 1 retrogene
retro_ptro_197,
Pteropus vampyrus ENSPVAG00000015764 possible_ortholog 1 retrogene
retro_pvam_371,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1416 84.96 93.65
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Download FASTA sequences of all ENSCJAG00000011903 retrocopies