Parental gene:

UBE2L3, ENSCAFG00000015284

Aliases:None
Description:ubiquitin-conjugating enzyme E2L 3 [Source:HGNC Symbol;Acc:12488]
Organism:Dog (Canis familiaris)
Coordinates:26:30835313..30898001(+)


>ENSCAFG00000015284
ATGGCGGCCAGCAGGAGGCTGATGAAGGAGCTTGAAGAAATCCGCAAATGTGGAATGAAAAACTTCCGTAACATCCAGGT
TGATGAAGCTAATTTATTGACTTGGCAAGGGCTTATTGTTCCTGACAACCCTCCATATGATAAGGGGGCCTTCAGAATCG
AAATCAACTTTCCAGCAGAGTACCCATTCAAACCACCGAAGATCACATTTAAAACAAAGATCTATCATCCAAACATTGAT
GAAAAGGGGCAGGTCTGTCTGCCAGTAATTAGTGCTGAAAACTGGAAGCCAGCAACCAAAACCGACCAAGTAATCCAGTC
CCTCATAGCACTGGTGAACGACCCCCAGCCCGAGCACCCACTTCGGGCTGACCTAGCTGAAGAATACTCTAAGGACCGTA
AAAAATTCTGTAAGAACGCTGAAGAGTTTACAAAGAAATACGGGGAGAAGCGACCTGTGGAC

Library Parental gene expression (RPM)
SRP012049_cerebellum 33 .81 RPM
SRP017611_brain 16 .59 RPM
SRP017611_kidney 25 .16 RPM
SRP017611_liver 7 .90 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000014163 other_paralog 3 retrogenes
retro_cfam_2076, retro_cfam_2161, retro_cfam_27,
Canis familiaris ENSCAFG00000031041 within_species_paralog 5 retrogenes
retro_cfam_1191, retro_cfam_1439, retro_cfam_1602, retro_cfam_2034, retro_cfam_785,
Callithrix jacchus ENSCJAG00000015818 ortholog_one2one 9 retrogenes
retro_cjac_1813, retro_cjac_1815, retro_cjac_1998, retro_cjac_2073, retro_cjac_2511, retro_cjac_2576, retro_cjac_2856, retro_cjac_3174, retro_cjac_3296,
Cavia porcellus ENSCPOG00000006044 ortholog_one2one 2 retrogenes
retro_cpor_692, retro_cpor_835,
Dipodomys ordii ENSDORG00000011406 ortholog_one2one 1 retrogene
retro_dord_357,
Equus caballus ENSECAG00000019274 possible_ortholog 1 retrogene
retro_ecab_116,
Felis catus ENSFCAG00000008008 ortholog_one2one 1 retrogene
retro_fcat_369,
Gorilla gorilla ENSGGOG00000028073 ortholog_one2one 3 retrogenes
retro_ggor_1425, retro_ggor_861, retro_ggor_924,
Myotis lucifugus ENSMLUG00000001547 possible_ortholog 1 retrogene
retro_mluc_32,
Monodelphis domestica ENSMODG00000017665 ortholog_one2one 2 retrogenes
retro_mdom_2029, retro_mdom_956,
Mus musculus ENSMUSG00000038965 ortholog_one2one 10 retrogenes
retro_mmus_1619, retro_mmus_1620, retro_mmus_2147, retro_mmus_2212, retro_mmus_2272, retro_mmus_2315, retro_mmus_3205, retro_mmus_3714, retro_mmus_541, retro_mmus_995,
Nomascus leucogenys ENSNLEG00000000192 ortholog_one2one 1 retrogene
retro_nleu_97,
Pongo abelii ENSPPYG00000011602 ortholog_one2one 1 retrogene
retro_pabe_99,
Pan troglodytes ENSPTRG00000014114 ortholog_one2many 1 retrogene
retro_ptro_123,
Rattus norvegicus ENSRNOG00000001862 ortholog_one2one 4 retrogenes
retro_rnor_1602, retro_rnor_2633, retro_rnor_2799, retro_rnor_526,
Tetraodon nigroviridis ENSTNIG00000010600 ortholog_one2many 1 retrogene
retro_tnig_16,
Takifugu rubripes ENSTRUG00000003392 ortholog_one2one 1 retrogene
retro_trub_39,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1090 92.91 82.47
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Download FASTA sequences of all ENSCAFG00000015284 retrocopies