Parental gene:

UBE2L3, ENSFCAG00000008008

Aliases:None
Description:ubiquitin-conjugating enzyme E2L 3 [Source:HGNC Symbol;Acc:12488]
Organism:Cat (Felis catus)
Coordinates:D3:28601225..28653670(+)


>ENSFCAG00000008008
ATGGCGGCCAGCAGGAGGCTGATGAAGGAGCTTGAAGAAATCCGCAAATGTGGAATGAAAAACTTCCGTAACATCCAGGT
TGATGAAGCTAATTTATTGACTTGGCAAGGGCTTATTGTTCCTGACAACCCTCCATATGATAAGGGGGCCTTCAGAATCG
AAATCAACTTTCCAGCAGAGTACCCATTCAAACCACCGAAGATCACATTTAAAACAAAGATCTATCACCCGAACATCGAT
GAAAAGGGGCAGGTCTGTCTGCCGGTAATTAGTGCTGAAAACTGGAAGCCAGCAACCAAAACCGACCAAGTAATCCAGTC
CCTCATAGCACTGGTGAACGACCCCCAGCCCGAGCACCCACTTCGGGCTGACCTAGCTGAAGAATACTCTAAGGACCGTA
AAAAATTCTGTAAGAACGCTGAAGAGTTTACAAAGAAATACGGGGAGAAGCGACCTGTGGAC

Library Parental gene expression (RPM)
SRP017611_liver 14 .35 RPM
SRP017611_kidney 20 .41 RPM
SRP017611_brain 17 .56 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000015284 ortholog_one2one 1 retrogene
retro_cfam_1090,
Callithrix jacchus ENSCJAG00000015818 ortholog_one2one 9 retrogenes
retro_cjac_1813, retro_cjac_1815, retro_cjac_1998, retro_cjac_2073, retro_cjac_2511, retro_cjac_2576, retro_cjac_2856, retro_cjac_3174, retro_cjac_3296,
Cavia porcellus ENSCPOG00000006044 ortholog_one2one 2 retrogenes
retro_cpor_692, retro_cpor_835,
Dipodomys ordii ENSDORG00000011406 ortholog_one2one 1 retrogene
retro_dord_357,
Equus caballus ENSECAG00000019274 possible_ortholog 1 retrogene
retro_ecab_116,
Felis catus ENSFCAG00000007748 other_paralog 2 retrogenes
retro_fcat_1582, retro_fcat_913,
Felis catus ENSFCAG00000024719 other_paralog 1 retrogene
retro_fcat_623,
Felis catus ENSFCAG00000024918 within_species_paralog 2 retrogenes
retro_fcat_1106, retro_fcat_785,
Gorilla gorilla ENSGGOG00000028073 ortholog_one2one 3 retrogenes
retro_ggor_1425, retro_ggor_861, retro_ggor_924,
Myotis lucifugus ENSMLUG00000001547 possible_ortholog 1 retrogene
retro_mluc_32,
Monodelphis domestica ENSMODG00000017665 ortholog_one2one 2 retrogenes
retro_mdom_2029, retro_mdom_956,
Mus musculus ENSMUSG00000038965 ortholog_one2one 10 retrogenes
retro_mmus_1619, retro_mmus_1620, retro_mmus_2147, retro_mmus_2212, retro_mmus_2272, retro_mmus_2315, retro_mmus_3205, retro_mmus_3714, retro_mmus_541, retro_mmus_995,
Nomascus leucogenys ENSNLEG00000000192 ortholog_one2one 1 retrogene
retro_nleu_97,
Pongo abelii ENSPPYG00000011602 ortholog_one2one 1 retrogene
retro_pabe_99,
Pan troglodytes ENSPTRG00000014114 ortholog_one2many 1 retrogene
retro_ptro_123,
Rattus norvegicus ENSRNOG00000001862 ortholog_one2one 4 retrogenes
retro_rnor_1602, retro_rnor_2633, retro_rnor_2799, retro_rnor_526,
Tetraodon nigroviridis ENSTNIG00000010600 ortholog_one2many 1 retrogene
retro_tnig_16,
Takifugu rubripes ENSTRUG00000003392 ortholog_one2one 1 retrogene
retro_trub_39,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_369 91.61 100.00
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Download FASTA sequences of all ENSFCAG00000008008 retrocopies